Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30458
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    87   4e-18
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.0  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    26   5.3  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.0  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.0  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   7.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.0  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   7.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.3  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 1/181 (0%)
 Frame = +3

Query: 204 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 383
           +L ++   + +LE +     D G+  +  GYR Q ++   P KGG+RF   V    +K L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94

Query: 384 SALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAP 563
                FK A   +P GG K G   +PK  S++E+ + ++ F  +L +  +IGP  DVPA 
Sbjct: 95  GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPAG 152

Query: 564 DMG-TGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENF 740
           D+G TG   M    +       +  +     VTGK +  GG + R  ATG GV + +++ 
Sbjct: 153 DIGVTGFVVMHMFGEYKRLRNEYSGV-----VTGKHMLTGGSNIRPEATGYGVVYYVKHM 207

Query: 741 I 743
           I
Sbjct: 208 I 208


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 515 TCQKRIHWAWRG 550
           TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 225 CDHILEIQFPLRR 263
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +3

Query: 321 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 452
           TPT  G   ST +T   V+ALS L     ACV  P  G   GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -3

Query: 300 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 121
           R+SL   +N  + AS+  + Q+       +L +   S  + + +    NL+   LRQ   
Sbjct: 45  RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104

Query: 120 LGGKNILPCGRTS-DSHL*EYL*AYLE 43
            GGK +  C  TS  ++  +YL  Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 336 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKAGIKINPKEY-SEHELEKIT 497
           GIR  T +TR  ++A  +L+   C C     VD+ F  A+ GI +    Y +   + ++ 
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYANSRSVAELV 160

Query: 498 RRFTLELAKK 527
             + + LA++
Sbjct: 161 IGYIISLARQ 170


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 330  KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 449
            KGG  F    + D   A S   T  C    +PFG    GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 546 VDVPAPDMGT----GEREMSWIADTYAKTVGFQDINAHACVTGKPI 671
           +D  APDM       E     +  T +K+ G   I    C+T KPI
Sbjct: 196 IDFSAPDMSALTLVNEYPNLAVCQTLSKSFGLAGIRIGFCLTSKPI 241


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 586  SRSPVPMSGAGTSTPGPMNPF 524
            + SP P S  GTSTP P + F
Sbjct: 1003 NNSPQPASMFGTSTPAPSSAF 1023


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 303 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 130
           ++D +   + +  + + EIES  +  + +    EYR LS +  + VSL S + Q   R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 496 LVVSPLNLP--KKDSLGLAWMSPLL 564
           L V PLNL    KD++G AW+ P+L
Sbjct: 444 LRVLPLNLELNDKDAVGRAWLLPVL 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,647
Number of Sequences: 5004
Number of extensions: 74155
Number of successful extensions: 285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)