Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30458
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 156 2e-38
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 154 5e-38
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 151 7e-37
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil... 77 2e-14
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 32 0.37
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 32 0.49
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 30 1.5
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 29 2.6
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 2.6
At5g37110.1 68418.m04454 hypothetical protein 29 3.5
At5g34838.1 68418.m04072 hypothetical protein contains Pfam doma... 29 4.6
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 29 4.6
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 29 4.6
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 29 4.6
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 28 6.1
At5g46540.1 68418.m05730 ABC transporter family protein contains... 28 8.0
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 156 bits (378), Expect = 2e-38
Identities = 80/171 (46%), Positives = 108/171 (63%)
Frame = +3
Query: 237 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 416
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 417 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSW 596
+P+GGAK GI +P + S ELE++TR FT ++ IG DVPAPDMGTG + M+W
Sbjct: 95 KIPYGGAKGGIGCDPSKLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTGPQTMAW 152
Query: 597 IADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINE 749
I D Y+K G+ + A VTGKPI+ GG GR +ATGRGV G E +NE
Sbjct: 153 ILDEYSKFHGY----SPAVVTGKPIDLGGSLGRDAATGRGVMFGTEALLNE 199
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 154 bits (374), Expect = 5e-38
Identities = 80/171 (46%), Positives = 107/171 (62%)
Frame = +3
Query: 237 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 416
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVA 94
Query: 417 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSW 596
+P+GGAK GI +P E S ELE++TR FT ++ IG DVPAPDMGTG + M+W
Sbjct: 95 KIPYGGAKGGIGCDPSELSLSELERLTRVFTQKI--HDLIGIHTDVPAPDMGTGPQTMAW 152
Query: 597 IADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINE 749
I D Y+K G ++ A VTGKPI+ GG GR +ATGRGV E +NE
Sbjct: 153 ILDEYSKFHG----HSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNE 199
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 151 bits (365), Expect = 7e-37
Identities = 78/171 (45%), Positives = 107/171 (62%)
Frame = +3
Query: 237 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 416
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 417 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSW 596
D+P+GGAK GI +P++ S ELE++TR FT ++ IG DVPAPDMGT + M+W
Sbjct: 95 DIPYGGAKGGIGCSPRDLSLSELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNAQTMAW 152
Query: 597 IADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINE 749
I D Y+K G ++ A VTGKPI+ GG GR +ATGRGV E + E
Sbjct: 153 ILDEYSKFHG----HSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAE 199
>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
to NADP-specific glutatamate dehydrogenase (NADP-GDH)
SP:P28724 [Giardia lamblia (Giardia intestinalis)]
Length = 637
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/172 (28%), Positives = 80/172 (46%)
Frame = +3
Query: 210 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 389
+L+EP + ++ + P D G+ + G+R Q + P +GGIRF + K L
Sbjct: 238 RLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRFHPSMNLSIAKFLGF 296
Query: 390 LMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDM 569
T K A GGA G +PK S++E+ + + F E+ + ++GP D+P+ ++
Sbjct: 297 QQTLKNALSPYKLGGASGGSDFDPKGKSDNEIMRFCQSFMNEMYR--YMGPDKDLPSEEV 354
Query: 570 GTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFH 725
G G REM ++ Y + G TG I R A+G GV +
Sbjct: 355 GVGTREMGYLFGQYRRLAG----QFQGSFTGPRIYWAASSLRTEASGYGVVY 402
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
finger (ZZ type) family protein contains Pfam profiles
PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +3
Query: 519 AKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRV 698
A +G + P G + + A VG +I + A TG P+ GG+HG
Sbjct: 149 ANSSSVGTMIPTPGLSQTAGNPNLMVTSSVDATIVGNTNITSTALNTGNPLIAGGMHG-- 206
Query: 699 SATGRGVFHGLENF-INEANYMSMIG 773
G H NF + M+ +G
Sbjct: 207 GNMSNGYQHSSRNFSLGSGGSMTSMG 232
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -2
Query: 718 TPLPVAETLPWMPPWLIGLPVTQA*ALMS*KPTVFA*VSAIQDISRSPVPMSGAGTSTPG 539
TP P+ T P MP +P+ +M P+ + D+ P+P + +PG
Sbjct: 68 TPPPMPMTPPPMPMAPPPMPMASP-PMMPMTPSTSPSPLTVPDMPSPPMPSGMESSPSPG 126
Query: 538 PMNPFLASS 512
PM P +A+S
Sbjct: 127 PMPPAMAAS 135
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 321 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 500
+PT GIR VT +KA AL++ K V V K G ++ + + TR
Sbjct: 398 SPTSAGIRSGASVTPRSIKARRALLSDKNEKVSVTERNGKLGTHLSDEISVSEGFRRSTR 457
Query: 501 RFTLELAKK 527
+ T +K
Sbjct: 458 QTTASKNEK 466
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
profile PF00018: SH3 domain
Length = 1196
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 779 GCTDHAHVV-GFVDEVLQAVEYAPARG*NSAVDATLVNRFASDAG 648
G TD A V G D + ++ + APA +S +D LVN +A++ G
Sbjct: 929 GSTDPAVVATGISDLIYESTQPAPAASNSSGLDDDLVNAWAANLG 973
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 114 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 293
HR+ VV++ + ++K + + K + I + E + + RR++ DYE LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 33 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 203
S EIPDKLKD P+ F ++ E H C VV K +E+ K RT +KK
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585
Query: 204 ILKLMEPCDHILEIQF 251
+ + P + L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601
>At5g34838.1 68418.m04072 hypothetical protein contains Pfam domain,
PF04827: Protein of unknown function (DUF635)
Length = 311
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 530 IHWAWRGCPRS*HG-YRRTR---NVLDRRYLCED 619
+HW W+ CP + G Y RT NV DR + +D
Sbjct: 106 MHWEWKNCPTAWKGQYTRTLNDINVFDRSPVFDD 139
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 586 SRSPVPMSGAGTSTPGPMNPFLASSRVKRRVIFSSSCSEYS 464
S+SP+P+S S P +NP +SS +RR I SSS S S
Sbjct: 25 SKSPLPISRF--SLPFSLNPNKSSSSSRRRGIKSSSPSSIS 63
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 339 IRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 500
+RF T ++ ++ L+ +TFK CV V + K I + E + L++I R
Sbjct: 605 VRF-TSLSTSRMRILAVALTFKSRCVYVNYEIPKDQILVGAAESDDPVLDRIAR 657
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 567 MGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVS 701
M TGER+ + I TY KT+ QDI T N G + GR+S
Sbjct: 125 MITGERQAARIRSTYLKTILRQDIGFFDVET----NTGEVVGRMS 165
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 28.3 bits (60), Expect = 6.1
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 348 STDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRR-FTLELAK 524
STDV V ++ A+ C+ + G + P + +E +E++++ +L
Sbjct: 24 STDVLLMIVGSIGAIANGVCSPLMTLLFGELIDA-MGPNQNNEEIVERVSKVCLSLVYLG 82
Query: 525 KGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDI 638
G +G A M TGER+ + I Y KT+ QDI
Sbjct: 83 LGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDI 120
>At5g46540.1 68418.m05730 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 27.9 bits (59), Expect = 8.0
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +3
Query: 423 PFGGAKAGIKINPKEYSEH-----ELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERE 587
PF G IN +S+H E+ K+ +F A G + + V M TGER+
Sbjct: 50 PFMSILMGQLINVFGFSDHDHVFKEVSKVAVKFLYLAAYAGVVS-FLQVSCW-MVTGERQ 107
Query: 588 MSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVS 701
+ I Y KT+ QDI T N G + GR+S
Sbjct: 108 STRIRRLYLKTILRQDIGFFDTET----NTGEVIGRMS 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,408
Number of Sequences: 28952
Number of extensions: 396868
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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