Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30454
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    31   0.13 
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    28   1.2  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    28   1.6  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.8  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 652 DKLILDAGCGPGNLSIGAVLLGAGFVTSVEI 744
           DK++LD GCG G LS+     GA  V  V++
Sbjct: 55  DKIVLDVGCGTGILSMFCARAGAKHVYGVDM 85


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 661 ILDAGCGPGNLSIG 702
           ILD GCGPG +++G
Sbjct: 44  ILDVGCGPGTITVG 57


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 655 KLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           K ILD GCG G LS     LGA  VT+V+
Sbjct: 79  KKILDIGCGGGILSESMARLGAS-VTAVD 106


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 655 KLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           K +LD GCG G LS+     GA  V +V+
Sbjct: 257 KTVLDVGCGTGILSMFCAKAGAKKVYAVD 285


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 266 AALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQDSS 445
           A +  P     LP  ++PP+      P L +A V NTS R +     A       S+   
Sbjct: 179 APVKSPPSAPSLPS-AVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPK 237

Query: 446 FGNQ 457
           F N+
Sbjct: 238 FPNR 241


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 263 TAALSQPNPVSQLPMC-SIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQD 439
           T+    P   S  P+  ++PP S ++     P A+  +T   ++   + +TSC    S  
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 440 SSFGNQILPVLP 475
            + GN   PV P
Sbjct: 347 PT-GNSTTPVTP 357


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 488 CSQNEVKLVEFDFQMRNPEIQNNHKMLRWRAGVQLYD 378
           C  N V+ +  DF+ R  ++  +  +L    G+++YD
Sbjct: 449 CFVNGVESINVDFEARIFDVSGDRLVLAGNGGLRVYD 485


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 259 VNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS*SKCDKY*S*SCTPARQRNILWL 423
           + SSP S  SC   +  F  TS     FS TS     K    + TP   +N+L++
Sbjct: 71  LTSSPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,014
Number of Sequences: 5004
Number of extensions: 67221
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)