Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30454
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314... 43 2e-04
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.56
08_02_1356 - 26348953-26350062 31 1.3
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 29 4.0
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 29 4.0
07_01_0121 - 924306-925838 29 4.0
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208... 29 4.0
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047 29 5.2
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 29 5.2
12_02_0674 - 21745321-21746223,21746229-21747608 28 6.9
06_01_0227 - 1733119-1734099 28 6.9
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 28 6.9
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 6.9
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 28 9.2
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 28 9.2
>06_01_0446 -
3147007-3147111,3147215-3147367,3147445-3147497,
3147670-3147988,3148754-3148892,3149141-3149222,
3149711-3149789,3150135-3150314,3150811-3151070,
3151192-3151294,3151469-3151609,3151797-3151870,
3153536-3153635,3154108-3154167,3154381-3154428,
3154519-3154610,3155023-3155071,3155810-3155879,
3156408-3156505,3157288-3157347
Length = 754
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = +1
Query: 508 MKLKTLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPG 687
MKLK LEG L DL+ F+ PK + F D+ K++ D GCG G
Sbjct: 1 MKLKQLEGLLGDLQQFTAPKA-------------------ENSFDDITGKVVADFGCGCG 41
Query: 688 NLSIGAVLLGAGFVTSVEID 747
LS+ + LL A V ++ID
Sbjct: 42 TLSVASSLLDAEHVVGIDID 61
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 646 LEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
+E K+++D GCG G LS+ GA V +VE
Sbjct: 82 IEGKVVMDVGCGTGILSVFCARAGAKCVYAVE 113
>08_02_1356 - 26348953-26350062
Length = 369
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 AALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGYFVSQDSS 445
AAL P +QLP+ + P G P+ + R A ++ G + +D++
Sbjct: 118 AALPVPRREAQLPLLAFDPADGGGGSPRYHVVCFVAWQERGATVDVFSSETGAWAERDAA 177
Query: 446 FG 451
FG
Sbjct: 178 FG 179
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 655 KLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
+++LD GCG G LSI GA V +V+
Sbjct: 83 EVVLDVGCGTGVLSIFCAFAGAARVYAVD 111
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 734 DVTNPAPSNTAPILRFPGPQPASKISLSSK 645
+V P P N+AP+L +P P+ A +++ K
Sbjct: 10 EVAVPMPPNSAPLLPYPPPRAAPGVAVRKK 39
>07_01_0121 - 924306-925838
Length = 510
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 560 LLKPFRSCRWPSKVFSFINAVIITCSQNEVKLVEF-DFQMRNPEIQNNHKMLRWRAGVQL 384
+L +++C P+ + N+ S+ EV + F DFQ N Q K+L WR+ +
Sbjct: 419 ILHDYQTCSVPNMLHRCTNSAQ---SEVEVPQLSFEDFQFGNVRPQGKFKVLGWRSHLPP 475
Query: 383 YD*YL 369
Y Y+
Sbjct: 476 YHDYM 480
>06_03_0539 +
21919115-21919313,21919474-21919582,21920595-21920819,
21921140-21921239,21921782-21921865,21922000-21922058,
21922578-21922770
Length = 322
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 595 AHIAAIALYTIQTQFGDLEDKLILDAGCGPGNLSI 699
A +A + LY + Q D + ILD GCG G+LS+
Sbjct: 117 AEVAMLELYCERAQLQD--GQTILDVGCGWGSLSL 149
>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
Length = 162
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 580 QYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVEIDAD 753
++ET H+A + L + + Q+ D AG GN SIG L +G+ S DAD
Sbjct: 79 RWETNGHVACLILSSFR-QWRRRWDDGFTSAGLR-GNGSIGVGLRDSGYTDSYSFDAD 134
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 661 ILDAGCGPGNLSIGAVLLGAGFVTSVE 741
+LD GCG G LS+ A GA V +V+
Sbjct: 295 VLDVGCGTGILSLFAAKAGASRVIAVD 321
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 253 CSVNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS 354
C V+S + K STS F PTSF N +STS
Sbjct: 698 CKVSSPTGACKFSTSTS-TFTPTSFSNDLTASTS 730
>06_01_0227 - 1733119-1734099
Length = 326
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 565 KIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPGNLSIGAVLLGAGFVTS 735
+++ + E A A L ++ L + DAGCG G+L+I GA + S
Sbjct: 121 RVQLDIREGHARTVAATLSMLRDSPVPLAGATVCDAGCGTGSLAIPLASQGASVLAS 177
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 260 LTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQH--ANATSCGYFVS 433
LTA L++P+ S P CS+P VS + L V+ T R LQ NA+ G
Sbjct: 790 LTAGLAEPS--SAFPGCSVPEVSHPRSWSSL---RVMTTEQRLELQQRIMNASENGKLPF 844
Query: 434 QD 439
+D
Sbjct: 845 RD 846
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 618 QSNCSNMSGCLVLLKFNFW 562
QS+ SN++GCL+LL+F W
Sbjct: 416 QSDGSNLTGCLLLLQFWSW 434
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 257 PLTAALSQPNPVSQLPMCSIPPVSATA 337
P AALS P ++ P +PP ++TA
Sbjct: 486 PAAAALSPPGAIAPAPASMLPPFNSTA 512
>06_03_0606 -
22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 624 CVQSNCSNMSGCLVLLKFNFW 562
C Q+ SNMSGC++L++ W
Sbjct: 893 CRQAPSSNMSGCVLLIQLWMW 913
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,065
Number of Sequences: 37544
Number of extensions: 413568
Number of successful extensions: 1259
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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