Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30454
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)                   95   5e-20
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)            32   0.43 
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   32   0.57 
SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)                   30   1.8  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               29   3.1  
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)            28   7.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)
          Length = 211

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = +1

Query: 508 MKLKTLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPG 687
           M+LK LEG+LQ +  F KPK+  EQY T AHIA+  LYT+   FGD+E KL+ D GCG G
Sbjct: 1   MRLKELEGYLQQVDVFEKPKVHLEQYPTTAHIASHLLYTVGQTFGDIEGKLVADLGCGCG 60

Query: 688 NLSIGAVLLGAGFVTSVEIDAD 753
            LS+G V++GA      +ID D
Sbjct: 61  VLSVGCVMMGAAMCVGFDIDKD 82


>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
          Length = 59

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 643 DLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           D +DK+++D G G G LS  A+  GA  V ++E
Sbjct: 18  DFQDKVVIDVGAGSGILSFFAIQAGARKVYAIE 50


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 652 DKLILDAGCGPGNLSIGAVLLGAGFVTSV 738
           DK++LD GCG G LS+ A   GA  V ++
Sbjct: 185 DKIVLDVGCGTGILSMFAAKAGAKHVYAI 213


>SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)
          Length = 192

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 643 DLEDKLILDAGCGPGNLSIGAVLLGAGFVTSVEID 747
           D+ D  + + G GPG+L+   +  GA  V +VEID
Sbjct: 45  DVFDCYVCEVGAGPGSLTRSILNAGARHVAAVEID 79


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 375  VFITFASGS*GKPAVAETGGMEHIGS*LTGFG*LRAAVNGATAPCFKSICFFNCRS 208
            + ITF     GKP +  +G M  + S  +  G     V     P FK++   NCRS
Sbjct: 1992 IAITFLGSGGGKPDMPVSGFMRDVLSMPSDLGLRNRKVTMLKKPAFKTLQMPNCRS 2047


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 625 IQTQFGDLEDKLILDAGCGPGNLSI 699
           I+   G  +DK++LD GCG G LS+
Sbjct: 143 IEQGAGYFKDKVVLDVGCGTGILSL 167


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 245 GAVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQHANATSCGY 424
           G V+PL +        S++P+   PP  A A F  LP A    + H+  ++  + T+  Y
Sbjct: 52  GPVSPLHSPKPHMANKSKMPVAQPPPAQAQA-FEFLPSATNQPSHHQQHIESIDGTT--Y 108

Query: 425 FVSQDS 442
           F SQ +
Sbjct: 109 FYSQQN 114


>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 722 PAPSNTAPILRFPGPQPASKISLSSK 645
           P P N  P+   P  QP SK+ L++K
Sbjct: 63  PNPENDIPLSTLPSIQPLSKVKLATK 88


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 406  VGVLECSSMTSIYHICFRKLRKTSCCRNWWDGTHRKL 296
            +G L C   T I  I  +K       R WWD T  KL
Sbjct: 2148 LGNLNCEWQTLIQEIEGQKKSIEKTARKWWDFTRNKL 2184


>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 646 LEDKLILDAGCGPGNL 693
           L +K++L+AGCG GNL
Sbjct: 433 LNEKVLLEAGCGVGNL 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,107,066
Number of Sequences: 59808
Number of extensions: 476670
Number of successful extensions: 1213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)