Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30454
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28830.1 68417.m04121 expressed protein                             89   4e-18
At4g29510.1 68417.m04210 protein arginine N-methyltransferase, p...    31   0.62 
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    31   0.62 
At3g12270.1 68416.m01532 protein arginine N-methyltransferase fa...    31   0.82 
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    30   1.4  
At4g33100.1 68417.m04716 expressed protein contains Pfam PF05254...    29   2.5  
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa...    28   7.7  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   7.7  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    28   7.7  

>At4g28830.1 68417.m04121 expressed protein
          Length = 208

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 42/82 (51%), Positives = 54/82 (65%)
 Frame = +1

Query: 508 MKLKTLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPG 687
           MKLK LEG L DL+ FS PK++FEQY T  HIA+  L+T +  +GD+ DK++ D GCG G
Sbjct: 1   MKLKQLEGLLGDLEQFSNPKVEFEQYPTGPHIASRMLFTAENSYGDITDKVVADFGCGCG 60

Query: 688 NLSIGAVLLGAGFVTSVEIDAD 753
            LS  A LL A  V   +ID +
Sbjct: 61  TLSAAAALLDAASVIGFDIDPE 82


>At4g29510.1 68417.m04210 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 2 [Homo sapiens] GI:7453575
          Length = 390

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 646 LEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           ++DK++LD G G G LS+     GA  V +VE
Sbjct: 106 IKDKIVLDVGAGTGILSLFCAKAGAAHVYAVE 137


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 646 LEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           ++DK++LD G G G LS+     GA  V +VE
Sbjct: 82  IKDKIVLDVGAGTGILSLFCAKAGAAHVYAVE 113


>At3g12270.1 68416.m01532 protein arginine N-methyltransferase
           family protein similar to protein arginine
           N-methyltransferase 3 from {Rattus norvegicus}
           SP|O70467, {Homo sapiens} SP|O60678
          Length = 590

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 646 LEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           L   +++D GCG G LS+ A   GA  V +VE
Sbjct: 275 LNGSVVMDVGCGTGILSLFAAKAGASRVVAVE 306


>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 646 LEDKLILDAGCGPGNLSIGAVLLGAGFVTSVE 741
           +E K+++D GCG G LSI     GA  V +V+
Sbjct: 117 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 148


>At4g33100.1 68417.m04716 expressed protein contains Pfam PF05254:
           Uncharacterised protein family (UPF0203)
          Length = 92

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 442 GILRYKITTRCCVGVLECSSMTSIYHICFRKLRKTSCCRNWWD 314
           G+L+ K +T        C+ + + YH CF K       +  WD
Sbjct: 2   GLLKKKDSTSARSSTSPCADLRNAYHNCFNKWYSEKFVKGQWD 44


>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
           family protein contains similarity to inositol
           polyphosphate 5-phosphatase I (GI:10444261) and II
           (GI:10444263) [Arabidopsis thaliana]; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 437

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 606 CNCSVHNSNTIWRFGR*TYFRC 671
           CNCS  + + + ++GR + FRC
Sbjct: 125 CNCSTFSEDIVRKYGRESCFRC 146


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 NTSHRAALQHANATSCGYFVSQDSSFGNQILPVLP 475
           NT+  A LQ+ +A  CG      +  GN   P++P
Sbjct: 300 NTTTTAILQYKSAPCCGVGGGSGTKKGNSFKPIMP 334


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 245 GAVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPE 358
           G + PL+  + QP P++++P    PP  A    P+ PE
Sbjct: 629 GQLPPLSMGMMQPPPMAEMPP-PPPPGEAPPPLPEEPE 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,391
Number of Sequences: 28952
Number of extensions: 344609
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)