Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30453
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.5  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   9.5  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 388 IYVLEYTCDSSIIYDCFFFVSK 453
           +Y L+     SI YDCFFF+ +
Sbjct: 70  LYQLDENAVLSIFYDCFFFLKE 91


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 356  LLLFEF*DLNVYMYWNILV 412
            L LF F DLNV  YW+ L+
Sbjct: 1858 LPLFHFLDLNVTEYWDYLL 1876


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 532 KDYKKVIMDIKDLKKSPAVRYVIDNVI 452
           K Y+K+I DI++  K+    Y I +VI
Sbjct: 813 KKYRKLIHDIREYLKTKLPSYAIPSVI 839


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 377 DLNVYMYWNILVIRVLFMIVFFLLANDIINYI 472
           DLN ++ +  LV+R+ F++VF L +  +I ++
Sbjct: 6   DLNHFINYFPLVLRLFFLVVFGLYSFTLILHL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,872
Number of Sequences: 5004
Number of extensions: 46961
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)