Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30453
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   3.3  
SB_29767| Best HMM Match : Diphtheria_R (HMM E-Value=6)                29   3.3  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   4.3  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           29   4.3  
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 98   KKKVKHFYNTMNITNRIEAKII--FKYEFRNSYW*CFMNHEIIYFVIAVAQCPKNYTHA- 268
            K+ ++HF    +  N  +A ++  F   F+   W  F +HE   ++  +     NY H+ 
Sbjct: 895  KRGIRHF----STKNETKASVVERFNRTFKGWMWRYFTHHEXRRYLDILPDLVDNYNHSY 950

Query: 269  HRSI 280
            HRSI
Sbjct: 951  HRSI 954


>SB_29767| Best HMM Match : Diphtheria_R (HMM E-Value=6)
          Length = 406

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 203 MNHEIIYFVIAVAQCPKNYTHAHRSITFTIAL*VNINE*FFF 328
           +N ++++++    Q PKNYTH    IT  + L  NIN+   F
Sbjct: 147 INKDLLFYLGHKGQVPKNYTH----ITLPVQLLRNINKDLLF 184



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 203 MNHEIIYFVIAVAQCPKNYTHAHRSITFTIAL*VNINE*FFF 328
           +N ++++++    Q PKNYTH    IT  + L  NIN+   F
Sbjct: 209 INKDLLFYLGHKGQVPKNYTH----ITLPVQLLRNINKDLLF 246


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 98  KKKVKHFYNTMNITNRIEAKII--FKYEFRNSYW*CFMNHEIIYFVIAVAQCPKNYTHA- 268
           K+ ++HF    +  N  +A ++  F   F+   W  F +HE   ++  +     NY H  
Sbjct: 93  KRGIRHF----STKNETKASVVERFNRTFKGWMWRYFTHHETRRYLDILPDLVDNYNHTY 148

Query: 269 HRSI 280
           HRSI
Sbjct: 149 HRSI 152


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 143 RIEAKII--FKYEFRNSYW*CFMNHEIIYFVIAVAQCPKNYTHA-HRSI 280
           R +A ++  F   F+ S W  F +HE   ++  +     NY H+ HRSI
Sbjct: 827 RDQASVVERFNRTFKGSMWRYFTHHETRRYLDILPDLVTNYNHSYHRSI 875


>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 143 RIEAKII--FKYEFRNSYW*CFMNHEIIYFVIAVAQCPKNYTHA-HRSI 280
           R +A ++  F   F+ S W  F +HE   ++  +     NY H+ HRSI
Sbjct: 565 RDQASVVERFNRTFKGSMWRYFTHHETRRYLDILPDLVTNYNHSYHRSI 613


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 337 ICFCNYSFII*I-LRSECIYVLEYTCDSSIIYDC 435
           +C C Y   + + LRS+C+ V+ YT   S+   C
Sbjct: 251 VCACRYVHSVCVSLRSQCVRVIMYTVCVSLCAQC 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,374
Number of Sequences: 59808
Number of extensions: 307468
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)