Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30453
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    28   6.6  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical
           protein C05E7.4 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 483 GLFFKSFMSIITFL*SFDCFY 545
           GLFF+     IT L +FDCFY
Sbjct: 108 GLFFQMLSVYITVLAAFDCFY 128


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 265 VCIIFWALSNSNYKVYNFMIHKASPI*VSKFIFKNYFSFNSICDVH 128
           V ++ WALS+S+     +  + A  + ++ F+F   F   SIC  H
Sbjct: 245 VAVLSWALSSSSGASIGYFHYAALLVIIAVFVFVLDFYAESICFQH 290


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 538 VFIGMGNYFDHIAAFIILSF*CVLMELFVYYYKY 639
           ++   GN FD I  FII++  C++  + + ++ +
Sbjct: 416 LYFSFGNLFDFIGNFIIIASVCLVFTIAILFFVF 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,563
Number of Sequences: 27780
Number of extensions: 257832
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)