Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30452
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 78 1e-15
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 69 9e-13
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 63 3e-11
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 57 2e-09
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 57 2e-09
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 50 2e-07
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 50 4e-07
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 48 2e-06
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 45 1e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 42 7e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 42 9e-05
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 40 4e-04
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 38 0.002
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 32 0.094
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.66
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.7
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 27 2.7
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 27 3.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 6.1
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 26 6.1
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 26 6.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.1
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 77.8 bits (183), Expect = 1e-15
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Frame = +3
Query: 147 GKSNAADAVVKEIKDKGGVAVADYNSVVEGEK-LIKT---AIDNFG-RIDILINNAGI-L 308
G++ A E++DK GV Y+ +E +I+T A++ G R+D++I NAGI +
Sbjct: 41 GRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAI 100
Query: 309 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ-- 482
S E W + ++L GA+ T AA F+KQ G ++ T+S +G N+ Q
Sbjct: 101 PHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQW 160
Query: 483 ANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 581
A+Y A K + LA LA+E A + +VN++ P
Sbjct: 161 ASYHATKAAVKHLARALAVEWAPF-ARVNSVSP 192
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 68.5 bits (160), Expect = 9e-13
Identities = 40/134 (29%), Positives = 61/134 (45%)
Frame = +3
Query: 180 EIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQ 359
+++D AD + + E I+ I G ID+LINNAG+ D F +++ + WD
Sbjct: 42 KVQDAALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDV 101
Query: 360 AVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAI 539
++ L+G + T KQ G ++ + G YSAAK GL L LA+
Sbjct: 102 SLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHIYLGSPAYSAAKAGLENLTKALAV 161
Query: 540 EGAKYNIKVNTIVP 581
I+VN P
Sbjct: 162 RYGPLGIRVNVCAP 175
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 63.3 bits (147), Expect = 3e-11
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Frame = +3
Query: 267 FGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMT 446
F IDI++ N GI KS MT +++ V+L G F H A F+KQ +G +V T
Sbjct: 96 FDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVAT 155
Query: 447 SSNAGLFGNFGQAN--YSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 581
+S +G+ N Q Y+ +K G++ L +LA+E K+ +VN + P
Sbjct: 156 ASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWRKF-ARVNCVSP 201
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 57.2 bits (132), Expect = 2e-09
Identities = 39/127 (30%), Positives = 55/127 (43%)
Frame = +3
Query: 201 VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 380
V D N+ +K ++ AI +FGRID+L+NNAG TE+ I ++ GA
Sbjct: 18 VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77
Query: 381 FKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNI 560
+ A FR Q G I+ SS G Y K + G++ L E +
Sbjct: 78 LEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGV 137
Query: 561 KVNTIVP 581
KV I P
Sbjct: 138 KVKIIEP 144
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 57.2 bits (132), Expect = 2e-09
Identities = 39/127 (30%), Positives = 55/127 (43%)
Frame = +3
Query: 201 VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 380
V D N+ +K ++ AI +FGRID+L+NNAG TE+ I ++ GA
Sbjct: 18 VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77
Query: 381 FKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNI 560
+ A FR Q G I+ SS G Y K + G++ L E +
Sbjct: 78 LEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGV 137
Query: 561 KVNTIVP 581
KV I P
Sbjct: 138 KVKIIEP 144
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 50.4 bits (115), Expect = 2e-07
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 213 DYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTT 392
D V E K A FG +DI+INNAG F ++ V+ G T
Sbjct: 55 DVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYIT 114
Query: 393 HAAWETFRKQ-KYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIE-GAKYNIKV 566
A R+ K GRI+ SS AG + + + Y+A+K + GL+ T+ E +NI +
Sbjct: 115 KEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNIAI 174
Query: 567 NTIVP 581
+ P
Sbjct: 175 TIVQP 179
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 49.6 bits (113), Expect = 4e-07
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Frame = +3
Query: 201 VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 380
+ +AD S ++ K I +++ ID +++ AG+L+ + +E++ D I +L A
Sbjct: 55 LTIADVQSDMKNLKSIFESVE----IDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSA 110
Query: 381 FKTTHAA---WETFRKQKYGRIVMT-SSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGA 548
K + A W + + R+++ SS + G + Y+A+K GL LA E A
Sbjct: 111 IKLSKMAILEWFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLESFTKVLAAEVA 170
Query: 549 KYNIKVNTIVP 581
I+VN I P
Sbjct: 171 SKGIRVNAISP 181
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/141 (20%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Frame = +3
Query: 177 KEIKDKGGVAVADYNSVVEGEKLIKTAIDN----FGRIDILINNAGILRDKSFTKMTEQD 344
K++ ++ GV V + ++ ++ F I +++ NAG+ +S +
Sbjct: 62 KKLAEETGVQVHTLKIDISRSDTVEAGVEEIQKIFKEIHVVVANAGMPFRRSVLDSPPHE 121
Query: 345 WDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ--ANYSAAKLGLVG 518
++ + ++ ++ + + F+KQ +G ++ T+S + N Q A Y A+K +
Sbjct: 122 FEKVMNINTNSVYRVAYYMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQ 181
Query: 519 LANTLAIEGAKYNIKVNTIVP 581
L LA+E A++ ++N++ P
Sbjct: 182 LCKALAVEWAEF-ARINSVSP 201
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 44.8 bits (101), Expect = 1e-05
Identities = 46/175 (26%), Positives = 74/175 (42%)
Frame = +3
Query: 123 LGSARDGAGKSNAADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDILINNAG 302
L +AR N A ++ +K + V D +SV E E+ ++ + G + LINNAG
Sbjct: 33 LATARQVERMDNLTKAGLQTLK----LDVTDEDSVREVEQEVRKFTN--GSLHYLINNAG 86
Query: 303 ILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ 482
+ +D + V+ G + A + K G IV +S
Sbjct: 87 APCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRAK-GTIVNVNSLVSYVPFAFN 145
Query: 483 ANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVPTAASRLTEDILPPEMYEAMKPE 647
A Y+A+K L+ +NTL IE A + ++V +I+ + M EA PE
Sbjct: 146 AAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKPLGTMTEAAIPE 200
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 42.3 bits (95), Expect = 7e-05
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Frame = +3
Query: 243 LIKTAIDNFGRIDILINNAGILR-DKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRK 419
L+ A+ G ID+L+NN + +S + ++ WDL ++ F T AA +
Sbjct: 111 LVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKS 170
Query: 420 QKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVP-TAASR 596
IV SS G +Y++ K + L+ + A++ I+VN + P +
Sbjct: 171 G--SSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTP 228
Query: 597 LTEDILPPEMYE 632
L P E E
Sbjct: 229 LVSSTFPKEKIE 240
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 41.9 bits (94), Expect = 9e-05
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 5/151 (3%)
Frame = +3
Query: 144 AGKSNAADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDN----FGRIDILINNAGI-L 308
A + + + + KE++ K V+V V K I I++ F ID+LINNAG+ L
Sbjct: 38 ARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLAL 97
Query: 309 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQAN 488
+ D + ++ G T A F + G I+ S AG G +
Sbjct: 98 GTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSV 157
Query: 489 YSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 581
Y + K L + L E I++ + P
Sbjct: 158 YCSTKSALAQFTSALRKETIDTRIRIMEVDP 188
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 39.9 bits (89), Expect = 4e-04
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +3
Query: 234 GEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQD---WDLIQAVHLKGAFKTTHAAW 404
G+ I+TAI FG++D +I NAG+L + K+ + D W + ++ +T A
Sbjct: 65 GKASIETAIKKFGKLDSVILNAGVL--EPIAKIADADINEWRKLFDINFFSVVETVKYAI 122
Query: 405 ETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIE 542
RK K G IV+ SS A + A Y +K + L L E
Sbjct: 123 PHLRKTK-GTIVIVSSGAAVRVFPAWAAYCCSKAAINMLVMNLGSE 167
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 207 VADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDK-SFTKMTEQDWDLIQAVHLKGAF 383
V S E + + A+D ID+L N+GI + + + E+ W+ ++ G
Sbjct: 63 VTSQQSANEAAQSVAKAVDG---IDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNVLGPI 119
Query: 384 KTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSA 497
A + K+K +++ TSS G G+F +SA
Sbjct: 120 HVFKAFYPLLTKKKTRQVIFTSSECGSMGDFRATGFSA 157
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 31.9 bits (69), Expect = 0.094
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Frame = +3
Query: 276 IDILINNAGILRD-KSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSS 452
ID+L N+GI + + K +++ W ++ G A + ++ K IV TSS
Sbjct: 84 IDVLWVNSGISKSFQPVLKTSDELWMSHYQTNVLGPIHVYQAFYHLLKEGKLKNIVFTSS 143
Query: 453 NAGLFGNFGQANYSA---AKLGLVGLANTLAIEGAKYNIKVNTIVP---------TAASR 596
A G YSA +K L ++ E K V +I P A +
Sbjct: 144 MAACMGGVRPNTYSAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDMFVNAMQK 203
Query: 597 LTEDILPPEMYEAMKPELIAP 659
L PEM E++K I+P
Sbjct: 204 LASKY--PEMVESIKSNAISP 222
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = -3
Query: 280 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLA 101
S+LP S++ S ++T SA++T PLS ++ TTA++A P S+ + + +
Sbjct: 413 SVLPTSSVSSTPLSSANSTTATSASST-PLSSVNSTTATSASSTPLSSVNSTTATSASST 471
Query: 100 P 98
P
Sbjct: 472 P 472
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 280 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTT 107
S+LP + + S ++T SA++TP S+ S TT SA+ P S++ S T T
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS-STPLSSVSSANSTTAT 336
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -3
Query: 280 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFP 146
S+LP S++ S ++T SA++T PL+ ++ TTA++A P
Sbjct: 527 SVLPTSSVSSTPLSSANSTTATSASST-PLTSVNSTTATSASSTP 570
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -3
Query: 247 ISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 98
+S + STT ++T++ PLS ++ TTA++A P S+ + + + P
Sbjct: 327 VSSANSTTA--TSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 374
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 373 FKWTAWIKSQSCSVILVKLLSRRMPALLIRISILPKLSIAVFISFSPSTTEL*SATATPP 194
F+W +W+ SQ S L S + + + P + +F +FS +T L SA P
Sbjct: 317 FEWGSWVSSQDTSKNSSNLASASVDDVSEESQVEP--NTLIFQNFSSPSTSL-SAPKDTP 373
Query: 193 LSLISLTTA 167
+ S+ T+
Sbjct: 374 AVIQSINTS 382
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 388 VLKAPFKWTAWIK 350
VLKAPF W+AW++
Sbjct: 200 VLKAPFFWSAWLE 212
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 438 VMTSSNAGLFGNFGQANYSAAKL-GLVGLANTLAIEGAKYNI 560
V +N L+ F + A + L+G+ TLAI G Y++
Sbjct: 93 VANDANVALYSTFAGLGFFAGSICNLIGVKLTLAIGGTGYSV 134
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 552 YNIKVNTIVPTAASRLTEDILPPEMYE 632
Y+I V TI+P + LT+ + ++Y+
Sbjct: 585 YDILVETILPAGSQTLTDSVFSSKLYK 611
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 268 KLSIAVFISFSPSTT--EL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTT 110
K +A +++ SPS + E + +ATP + L A + FP P+L +P TT
Sbjct: 12 KAVLAYWLNRSPSISKEEYKTVSATPAVQL-------AQIQFPLPTLVIPAESTT 59
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 402 WETFRKQKYGRIVMTSSNAGLFGNFGQAN 488
W FR + IV T + G F N G N
Sbjct: 80 WRPFRGEVVDAIVTTVNKMGFFANIGPLN 108
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 244 SFSPSTTEL*SATATPPLSLISLTTASAALDFPA 143
S S S + S+++TP +S I TT+S + D P+
Sbjct: 114 SNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPS 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,652
Number of Sequences: 5004
Number of extensions: 56078
Number of successful extensions: 190
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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