Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30451
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8013| Best HMM Match : Ornatin (HMM E-Value=5) 30 1.8
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 4.2
SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1) 28 7.3
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 7.3
SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5) 28 7.3
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8) 28 7.3
SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5) 28 7.3
SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1) 28 7.3
SB_35078| Best HMM Match : Dickkopf_N (HMM E-Value=5) 28 7.3
>SB_8013| Best HMM Match : Ornatin (HMM E-Value=5)
Length = 283
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 564 RVSRHGRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVA 445
R +HGR GDV + + A+ + C Y+ E KG+A
Sbjct: 115 RTDQHGRAGGDVSIDYIIKNCAAFKNGGCPYKDERLKGLA 154
>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 525 HAHRHTTGHAVRPSTDQYRYNYCFKT 602
H HT G + +P +R NYCFKT
Sbjct: 825 HVRIHT-GQSTKPMRSIFRCNYCFKT 849
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 769 SPFLLFSTFPNVPINIKNFHGDRRLTGD*A*KCLNYENCDEYLVVHILGTNG 614
S +L+F+ V +N + H +G LN NCD V H+L NG
Sbjct: 647 SRYLVFAPLSRVKVNSRELHLPSARSG------LNVLNCDHICVTHLLCFNG 692
>SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1)
Length = 235
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 126 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 185
Query: 375 NNC 367
C
Sbjct: 186 EQC 188
>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 854
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 107 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGIPPSRHYDLWSHYVSACRYMCSRSISP 166
Query: 375 NNC 367
C
Sbjct: 167 EQC 169
>SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5)
Length = 207
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 126 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 185
Query: 375 NNC 367
C
Sbjct: 186 EQC 188
>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
Length = 989
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 168 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGIPPSRHYDLWSHYVSACRYMCSRSISP 227
Query: 375 NNC 367
C
Sbjct: 228 EQC 230
>SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 44 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 103
Query: 375 NNC 367
C
Sbjct: 104 EQC 106
>SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5)
Length = 206
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 125 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 184
Query: 375 NNC 367
C
Sbjct: 185 EQC 187
>SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)
Length = 680
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 84 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 143
Query: 375 NNC 367
C
Sbjct: 144 EQC 146
>SB_35078| Best HMM Match : Dickkopf_N (HMM E-Value=5)
Length = 248
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 GRWCGDVRVSLFGHDLASLRQFACLYRVELYKGVAPEKHHSQVAEKPSC--*VCSRSKSH 376
GR V G + + C Y + KG+ P +H+ + S +CSRS S
Sbjct: 117 GRIPSKVATGFSGFSADQWKNWVCYYSLFALKGILPSRHYDLWSHYVSACRYMCSRSISP 176
Query: 375 NNC 367
C
Sbjct: 177 EQC 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,461,769
Number of Sequences: 59808
Number of extensions: 434070
Number of successful extensions: 920
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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