Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30451
         (773 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06389-1|CAA29686.1|  296|Homo sapiens synaptophysin protein.          34   0.65 
U93305-3|AAB92358.1|  313|Homo sapiens synaptophysin protein.          34   0.65 
BC064550-1|AAH64550.1|  313|Homo sapiens synaptophysin protein.        34   0.65 
X87852-1|CAA61132.1| 1871|Homo sapiens SEX protein protein.            32   2.0  
BX936365-2|CAI43194.1| 1871|Homo sapiens plexin A3 protein.            32   2.0  

>X06389-1|CAA29686.1|  296|Homo sapiens synaptophysin protein.
          Length = 296

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 211 YFNVIAQFGIWYSVGILFCYLFHIVEKY-HNWKWLRIEMIADVAFVFLYLTTST 369
           +F  +A F   YS+G L  Y+F +  KY  N K   ++ +A   F F++L +S+
Sbjct: 89  FFVTVAVFAFLYSMGALATYIF-LQNKYRENNKGPMLDFLATAVFAFMWLVSSS 141


>U93305-3|AAB92358.1|  313|Homo sapiens synaptophysin protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 211 YFNVIAQFGIWYSVGILFCYLFHIVEKY-HNWKWLRIEMIADVAFVFLYLTTST 369
           +F  +A F   YS+G L  Y+F +  KY  N K   ++ +A   F F++L +S+
Sbjct: 106 FFVTVAVFAFLYSMGALATYIF-LQNKYRENNKGPMLDFLATAVFAFMWLVSSS 158


>BC064550-1|AAH64550.1|  313|Homo sapiens synaptophysin protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 211 YFNVIAQFGIWYSVGILFCYLFHIVEKY-HNWKWLRIEMIADVAFVFLYLTTST 369
           +F  +A F   YS+G L  Y+F +  KY  N K   ++ +A   F F++L +S+
Sbjct: 106 FFVTVAVFAFLYSMGALATYIF-LQNKYRENNKGPMLDFLATAVFAFMWLVSSS 158


>X87852-1|CAA61132.1| 1871|Homo sapiens SEX protein protein.
          Length = 1871

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 420 AEKPSC*VCSRSKSHNNC*SCKVKEHKCNISYH 322
           A++PSC +C ++    NC  C + EH+C +  H
Sbjct: 788 AQRPSCGLCLKADPRFNCGWC-ISEHRCQLRTH 819


>BX936365-2|CAI43194.1| 1871|Homo sapiens plexin A3 protein.
          Length = 1871

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 420 AEKPSC*VCSRSKSHNNC*SCKVKEHKCNISYH 322
           A++PSC +C ++    NC  C + EH+C +  H
Sbjct: 788 AQRPSCGLCLKADPRFNCGWC-ISEHRCQLRTH 819


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,727,933
Number of Sequences: 237096
Number of extensions: 2104336
Number of successful extensions: 3326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3326
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)