Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30450
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.4  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   5.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 432 WKLGPRGEPEPTSNGRSARTR 370
           WK  P+G P P+S   S  T+
Sbjct: 67  WKKSPQGAPSPSSTPSSLPTQ 87


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 554 GVHPS-GHLAADPAKAKDGEGLASELAASVQSPVPPASLQRSGSWDHVASQNQHQTAGQ 381
           G+ P+ G+   DPA A  G G   +LAA  ++    ++     +W +   +N + T G+
Sbjct: 59  GLQPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLK-AWLNEHKKNPYPTKGE 116


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 79  GFDRRRGWRQVCRTPQRLRNRHHYQG 156
           G D++  W + CR  ++L  R ++ G
Sbjct: 579 GLDQQNQWCKPCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 79  GFDRRRGWRQVCRTPQRLRNRHHYQG 156
           G D++  W + CR  ++L  R ++ G
Sbjct: 471 GLDQQNQWCKPCRPREQLTWRRNFHG 496


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 121 PQRLRNRHH 147
           PQRLR RHH
Sbjct: 21  PQRLRIRHH 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,774
Number of Sequences: 336
Number of extensions: 3374
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)