Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30450
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.70 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 440 EGWQVGPGSVHWQRARWQDPRHPWP--WQGRP 529
           E   V  GS++   A W+ PR  WP  W+ RP
Sbjct: 559 ESISVDSGSINTV-AEWEPPRALWPTEWKVRP 589



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 403 TNIKRQVSSHALSALAPGALITPTPFLPAESTSMLS 296
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 315 SAGKKGVGVINAPGANALSACELTCRLMLVLARHVVPAS 431
           S       +  A   +A +A + +CR    LA +V PAS
Sbjct: 124 STAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPAS 162


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 400 WFWLATWSQLPL 435
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 589  TKGSNPMMFMPKAYILVATSRPTL 518
            TKGS P++     +I VAT+  TL
Sbjct: 1456 TKGSKPIIPEAARFIEVATNSITL 1479


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 400 WFWLATWSQLPL 435
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,992
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)