Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O57747 Cluster: Putative uncharacterized protein PH0032...    36   1.5  
UniRef50_Q99665 Cluster: Interleukin-12 receptor beta-2 chain pr...    33   6.1  

>UniRef50_O57747 Cluster: Putative uncharacterized protein PH0032;
           n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
           protein PH0032 - Pyrococcus horikoshii
          Length = 370

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = +3

Query: 495 LFACTYVAVNDMLIYNIIIKPATSASGGCFETLL*MFIVLFTRLLKS*RIRFCFQSLRFL 674
           LFA    A+   L++ +   P+   S G F+ LL + + +FT L  S  ++  F+  +FL
Sbjct: 169 LFASVPAALVSKLMFPMRFWPSFEYSYGLFDYLLILLLGIFTGLYSSAFMQLLFKLRKFL 228

Query: 675 IKKNHK 692
           +K+++K
Sbjct: 229 VKRSYK 234


>UniRef50_Q99665 Cluster: Interleukin-12 receptor beta-2 chain
           precursor; n=17; Eutheria|Rep: Interleukin-12 receptor
           beta-2 chain precursor - Homo sapiens (Human)
          Length = 862

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 275 GVSLSNRETITWCVFIRASTTTRRGDINIRTTHLLLYCSLTIPTTCDVLP 126
           G SL+    ITW +        +RGD+ ++ +H++L  S T+  TC + P
Sbjct: 7   GCSLAFMFIITWLLIKAKIDACKRGDVTVKPSHVILLGS-TVNITCSLKP 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,944,986
Number of Sequences: 1657284
Number of extensions: 14897407
Number of successful extensions: 34596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34586
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)