Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    29   0.57 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.3  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    27   4.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   5.3  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    26   7.0  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.3  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 655 KQNLIL*DFSNLVNRTINIQSRVSKHPPLAL 563
           +Q LIL D   L NR+I++ S V KH  + L
Sbjct: 611 EQQLILTDKDRLENRSISVSSEVGKHTAVTL 641


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 298 LRGRHRPLVCRLATEKLLHGAFLSEHRLLHVEGI-SISGQHIFFYIVPSRSRPH--VTFF 128
           L G H  L  +   E L H   +S+H  L  EG  +   +H  ++++P+ SR +  +T F
Sbjct: 772 LTGSHARLAQQKLDESLRHSDKVSQHLSLRDEGTPNHLIKHNSYFLLPTVSRHYRPITIF 831

Query: 127 HCVR 116
             +R
Sbjct: 832 EAIR 835


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 425 METYSTQGSLPAASRERGFRLITADLDRGSLFCRE*E-LHAEL 300
           M+TY  QG+LP  S+ + F   T  L +G  FC E   LH +L
Sbjct: 89  MDTYGNQGALP-PSQVKNF---TQQLLKGISFCHENRVLHRDL 127


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 171 KKMCCPDIDIPSTCSSRCSDKNAPCNSFSVAKRHTRGRWRPRN*LRVQLSFSTE-QRPPI 347
           +K+C PD +  S+C   C  +   C     +  H       R   +  L  S E  R   
Sbjct: 714 EKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRK 773

Query: 348 QVSCD 362
           +V+CD
Sbjct: 774 KVTCD 778


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 220 RLLHVEGISISGQHIFFYIVPSRSR 146
           R+ H++ + I G HI F IVP   R
Sbjct: 52  RVSHLDQVYIRGSHIRFLIVPDMLR 76


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 328 QNKDPLSRSAVIRRKPRSLDAAGR 399
           Q K P S S+  +R+PRSL + GR
Sbjct: 506 QLKYPSSSSSSFQRRPRSLPSRGR 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,323
Number of Sequences: 5004
Number of extensions: 63522
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)