Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30449
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 31 0.78
09_03_0153 - 12814596-12815645 30 2.4
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712... 30 2.4
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 29 5.5
06_01_0567 - 4004743-4004957,4005565-4005649,4006292-4006478,400... 28 7.3
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 28 7.3
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 28 9.6
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 28 9.6
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 31.5 bits (68), Expect = 0.78
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 478 CFSADDISNLYFPC*LVIWKRIQRKG-VSLRRLGSAASV*SQLTWIGGLCSVENESCTRS 302
CF + +S+L F ++I + G V +R + ASV S W L S E C S
Sbjct: 95 CFQSSALSHLGFDDGILIQQPGSMMGPVDVRAVAEIASVESVAQW---LISYNEEQCHES 151
Query: 301 *LRGRHRPLVC 269
L G H ++C
Sbjct: 152 FLSGLHDCMIC 162
>09_03_0153 - 12814596-12815645
Length = 349
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 452 FIFSMLIGNMETYSTQGSLPAASRERGFRLI 360
++FS+ G++ET+ T SLP A R+ F L+
Sbjct: 319 YVFSVEDGSVETFDTFESLPGAPRQTPFWLV 349
>04_03_0684 -
18670697-18670933,18671003-18671102,18671214-18671266,
18671664-18671810,18671901-18672031,18673064-18673088,
18673201-18673305,18673941-18674054,18674900-18674992,
18675101-18675193,18675951-18676057,18676442-18676490,
18677140-18677253,18677728-18677787,18677887-18677955,
18679154-18679255,18679338-18679366,18679450-18679732,
18680399-18680752
Length = 754
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 40 LVARWSDLVRESLGGSLYHAVMPPMIEHSGRTSHVVGIVREQYRRRCVVLILISPLRVVV 219
L+ + D+VR+S+ ++ A+M ++ H+ R H V ++R+ YR + +L V++
Sbjct: 601 LIKSYYDIVRKSIEDAVPKAIMHFLVNHTKRELHNV-LIRKLYRENLLDEMLRETDEVII 659
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 516 LRKYTQITWHRKF---VSLQTIFLIYIFHVNW*YGN 418
LRK T + RK V + IF+I++F V W Y N
Sbjct: 236 LRKQTALKGERKIAVLVGITVIFMIHVFGVYWWYRN 271
>06_01_0567 -
4004743-4004957,4005565-4005649,4006292-4006478,
4006586-4006701,4006792-4006974
Length = 261
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 205 LRVVVDALIKTHHVIVSLLLSDTPEVGGGRAISSACSSHSRQNKDPLSRSAVIRRKPR 378
LR +++IK HH S+ L+ GGG S ++ ++ SR V+RR R
Sbjct: 90 LRSQRESVIKRHHSTGSIKLNRGATGGGGGGGRSTATAAMGVQREVYSRKGVMRRLMR 147
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 237 APCNSFSVAKRHTRGRWR 290
+PC+ V RH RGRWR
Sbjct: 10 SPCSPSPVPPRHRRGRWR 27
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 244 HGAFLSEHRLLHVEGISISGQHIFFYIVPS 155
HGAF S+H +V SG+ +F+Y+V S
Sbjct: 47 HGAFPSKHYSGYVTVDEGSGRRLFYYLVTS 76
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 42 RSQMVRSSKRITWW*SVPCGHATHDRTQWKNVTCGRDR 155
RS + S +TWW +A++ +W+ V CGR R
Sbjct: 44 RSMVSDPSGALTWW------NASNHPCRWRGVACGRGR 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,184,404
Number of Sequences: 37544
Number of extensions: 422033
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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