Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                30   1.8  
SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)                     29   5.6  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 29   5.6  
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   28   7.4  
SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         28   7.4  
SB_49237| Best HMM Match : GAT (HMM E-Value=3.4)                       28   9.8  
SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 52  WSDLVRESLGGSLYHAVMPPMIEHSGRTSHVVGIVREQYRRRCVVLILISPLRVVVDALI 231
           W++L     G  +  A++  +        HV   +R  Y  R V+L  ++  R+ +D L+
Sbjct: 184 WAELFGIEQGTPVKLALVTALAHSRDYIPHVAAAIRRTYGPRVVILGAVAHDRLFIDGLV 243

Query: 232 KTHHVIVSLLLSD 270
           K   V    +  D
Sbjct: 244 KKARVTALFISGD 256


>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -1

Query: 362 ITADLDRGSLFCRE*ELHAELIARPPPTSGVSLSNRETITWCVFIRASTTTRRGDINI-R 186
           +TAD+  G+LF  +  L + +      T+  +LS+ +T    +    +  T  G ++  +
Sbjct: 415 LTADMTLGTLFSHKTTLRSLVCTLTADTTVGTLSSHKTTLRSLVCTLTADTTLGTLSSHK 474

Query: 185 TTHLLLYCSLTIPTTCDVL 129
           TT   L C+LT  TT   L
Sbjct: 475 TTLRSLVCTLTAGTTLGTL 493



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 362 ITADLDRGSLFCRE*ELHAELIARPPPTSGVSLSNRETITWCVFIRASTTTRRGDINI-R 186
           +TAD+  G+LF  +  L + +       +  +LS+ +T    +    +  T  G ++  +
Sbjct: 687 LTADMTLGTLFSHKTTLRSLVCTLTADATVGTLSSHKTTLRSLVCTLTADTTLGTLSSHK 746

Query: 185 TTHLLLYCSLTIPTTCDVL 129
           TT   L C+LT  TT   L
Sbjct: 747 TTLRSLVCTLTAGTTLGTL 765


>SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 163 VPSRSRPHV-TFFHCVRSWVA*PHGTDYHQVILLLDLTIWLRVTIHK 26
           VP  +  H+ T+ H V   V   HG   HQ +    ++ W  VT H+
Sbjct: 287 VPGVTSHHISTWCHAVSRHVTSTHGVTSHQYLASRHISTWRHVTSHQ 333


>SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)
          Length = 201

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 259 LLSDTPEVGGGRAISSACSSHSRQNKDP-LSRSAVIRRKPRSLDAAGRL 402
           L+ + P     RA+   CS++ +QNK+P +++  ++R+ P   +  G+L
Sbjct: 23  LIHEIPNTYSVRAVD--CSTN-QQNKEPFINKETIVRKNPHPFNGLGKL 68


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 259 LLSDTPEVGGGRAISSACSSHSRQNKDP-LSRSAVIRRKPRSLDAAGRL 402
           L+ + P     RA+   CS++ +QNK+P +++  ++R+ P   +  G+L
Sbjct: 372 LIHEIPNTYSVRAVD--CSTN-QQNKEPFINKETIVRKNPHPFNGLGKL 417


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 655 KQNLIL*DFSNLVNRTINIQSRVSKHPPLALVAG 554
           KQNLI   FS  +N TI    R  KH  L++  G
Sbjct: 130 KQNLIFSYFSECLNATIETAKREGKHVTLSVDRG 163


>SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 96  CGHATHDRT--QWKNVTCGRDREGTI*KKMCCPDIDIPSTCSSRCSDKNA 239
           CGH  H +   + ++ TC   R   +  K+C  D+DI S      SD+ +
Sbjct: 44  CGHGNHLKCVLRLRSATCPVCRRPLVSDKLCVCDLDIMSIGYKELSDEES 93


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 52  WSDLVRESLGGSLYHAVMPPMIEHSGR 132
           W D ++E LGG  Y  + P M++H G+
Sbjct: 142 WEDRIKE-LGGPDYGKIGPKMLDHEGK 167


>SB_49237| Best HMM Match : GAT (HMM E-Value=3.4)
          Length = 623

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 211 VVVDALI-KTHHVIVSLLLSDTPEVGGGRAISSAC-SSHSRQNKDPLSRSAVIRRKPRSL 384
           V+ D L+ +T H    L+++DTP +   R   + C + H      PL R+      P  +
Sbjct: 34  VITDTLLLRTSHYYGHLVITDTPLLWTSRYYRTPCYNGHPTITDIPLLRTPCYNGHPTIM 93

Query: 385 D-AAGRLPC 408
           D    R PC
Sbjct: 94  DIPLLRTPC 102


>SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 974

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 ISPLRVVVDALIKTHHVIVSLLLSDTPEVGGGRAISSACSSHSRQNKDPLSRSAVIRRKP 375
           ++ L  + D L+K +  + S+L     + G    +    ++  R N+DP+SR A +R  P
Sbjct: 386 VAELTQMRDRLLKENTRLRSMLHGKYVKDGNLEEVPKGNAAACRDNEDPISR-ATLRNPP 444

Query: 376 RSL 384
           R +
Sbjct: 445 RKV 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,590,647
Number of Sequences: 59808
Number of extensions: 510288
Number of successful extensions: 1196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)