Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = +1

Query: 205 LRVVVDALIKTHHVIVSLLLSDTPEVGGGRAISSACSSHSRQNKDPLSRSAVIRRKPRSL 384
           LR  V   + +    +S L +       GR ++ + S HS  + DP+ +    + +P  +
Sbjct: 414 LRPAVGGKVSSSRGALSNLSNSEQNKKYGRGVTQSFSGHSLNDNDPMPKEHDPKVQPSVI 473

Query: 385 DAAGRLPCVEYVSILPINMENI 450
            +   LP    VS++   M  +
Sbjct: 474 ISCLSLPTTSPVSVVKPKMTGV 495


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 171  KKMCCPDIDIPSTCSSRCSDKNAPCNSFSVAK 266
            + MC   ++   TCS++C +   PC +F   K
Sbjct: 1787 QNMCQKVLNCGHTCSAKCGESCPPCKAFCTNK 1818


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
            T16G12.1 protein.
          Length = 1890

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 284  PTSGVSLSNRETITWCVFIRASTTTRRGDINIRTTHLLLYC 162
            PT  ++LSN   I   ++    TTT+    N  +T+LL  C
Sbjct: 1171 PTDMIALSNEVDIQRTIYDNGWTTTKFATTNQMSTYLLALC 1211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,358,407
Number of Sequences: 27780
Number of extensions: 366153
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)