Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 488 IANLFLCRRYF*FIFSMLIGNMETYSTQGSLPAASR 381
           I  L L  RY  F+F +L  NME  +T+G+  A+ R
Sbjct: 291 IQTLKLATRYIDFLFQVLHCNME--NTEGADDASER 324


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 550 LNRPLVPVVDVLKLCSECLLFYLQD 624
           L RP+V   DVL++C +  L  L D
Sbjct: 43  LVRPVVNTSDVLRVCIKLKLSQLID 67


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 550 LNRPLVPVVDVLKLCSECLLFYLQD 624
           L RP+V   DVL++C +  L  L D
Sbjct: 43  LVRPVVNTSDVLRVCIKLKLSQLID 67


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 582 NIHHWH 565
           N+HHWH
Sbjct: 206 NLHHWH 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,602
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)