Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30449
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03150.1 68414.m00292 GCN5-related N-acetyltransferase (GNAT)...    29   2.6  
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic...    29   4.6  
At4g25760.1 68417.m03708 expressed protein                             28   6.1  
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr...    28   6.1  
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    28   8.0  
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    28   8.0  

>At1g03150.1 68414.m00292 GCN5-related N-acetyltransferase (GNAT)
           family protein similar to SP|P07347 N-terminal
           acetyltransferase complex ARD1 subunit (Arrest-defective
           protein 1) {Saccharomyces cerevisiae}; contains Pfam
           profile PF00583: acetyltransferase, GNAT family
          Length = 174

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +1

Query: 43  VARWSDLVRESLG-GSLYHAVMPPMIEHSGRT--SHVVGI-VREQYRRRCVVLILISPLR 210
           +ARW D    + G G+     +   +E  G +   HV  + V  +YRR+ +   L++ L 
Sbjct: 36  LARWPDYFHVAEGPGNRVMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLE 95

Query: 211 VVVDALIKTHHVIVSLLLSDTPEV 282
            + D + K + V + +  S+TP +
Sbjct: 96  DISDKIDKAYFVDLFVRASNTPAI 119


>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
           to dynamin like protein 2a (ADL2a) [Arabidopsis
           thaliana] GI:19032337; supported by cDNA gi:19032336
          Length = 808

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 40  LVARWSDLVRESLGGSLYHAVMPPMIEHSGRTSHVVGIVREQYRRRCVVLILISPLRVVV 219
           L+  + D+VR+++  S+  A+M  ++ H+ R  H V  +++ YR      +L  P  + V
Sbjct: 676 LLRSYYDIVRKNIEDSVPKAIMHFLVNHTKRELHNV-FIKKLYRENLFEEMLQEPDEIAV 734


>At4g25760.1 68417.m03708 expressed protein
          Length = 129

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 204 RGYQYQD--NTSSSILFPHDPDH 142
           R Y YQD  N SSS++ PH P H
Sbjct: 7   RQYNYQDSINASSSMVVPHSPWH 29


>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 350

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 418 RIQRKGVSLRRLGSAASV*SQLTWIGG 338
           ++Q K +S+ RLG AASV SQ++  GG
Sbjct: 194 QLQVKVLSMSRLGGAASVSSQISEAGG 220


>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 883

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 217 LLHVEGISISGQHIFFYIVPSRSRPHVTFFH 125
           L HV G+   G    FY+VP+ +R ++T  H
Sbjct: 9   LSHVRGLIRQGPSSRFYVVPALARTNLTISH 39


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
           region
          Length = 1088

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -1

Query: 302 LIARPPPTSGVSLSNRETITWC-------VFIRASTTTRRGDINIRTTHLLL 168
           LI  PPP  GV +   ETI +C       + IR S T   G +++  +  LL
Sbjct: 219 LIPVPPPLCGVLIIGEETIVYCSASAFKAIPIRPSITKAYGRVDVDGSRYLL 270


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 283 GGGRAISSACSSHSRQNKDPLSRSAVIRRKPR 378
           GGGRA++ A + HS +N D LSR A  R  PR
Sbjct: 271 GGGRAVA-ASAFHSTRNTDTLSR-AGRRLNPR 300


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 283 GGGRAISSACSSHSRQNKDPLSRSAVIRRKPR 378
           GGGRA++ A + HS +N D LSR A  R  PR
Sbjct: 271 GGGRAVA-ASAFHSTRNTDTLSR-AGRRLNPR 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,957
Number of Sequences: 28952
Number of extensions: 329015
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)