Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30448
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    29   0.52 
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    25   8.5  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    25   8.5  

>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -1

Query: 385 TFAPN--FFDISLIDVFRKKNHK*F-PIAY*FSNIILHCFNLGCVITSSNCIVRRQPQ 221
           T+ PN    +++L D   ++ +    P++Y  SN+IL CF++ C  + +N   +  P+
Sbjct: 56  TYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE 113


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 238 VRRQPQDVR-LRRVQQDIASATVGS 167
           VRRQ  DV  LRRV Q +A  T+G+
Sbjct: 133 VRRQAVDVSPLRRVNQALALITIGA 157


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 238 VRRQPQDVR-LRRVQQDIASATVGS 167
           VRRQ  DV  LRRV Q +A  T+G+
Sbjct: 133 VRRQAVDVSPLRRVNQALALITIGA 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,166
Number of Sequences: 5004
Number of extensions: 49419
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)