Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30446
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.3  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.7  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 369 ILKVFSSTWKAKFVRYTCWS 428
           I KV    +K     YTCWS
Sbjct: 216 IYKVLEEKYKTSGSLYTCWS 235


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 336 TLISKTK*MVFILKVFSSTWKAKF 407
           T++ KTK  +FILK    T+   F
Sbjct: 93  TILKKTKSNIFILKESVDTFNDIF 116


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394 HVLLKTFKMKTIYFVLLISVCAV 326
           HV+L+TF      FV+ + + AV
Sbjct: 626 HVILETFHFSEADFVMDVVMLAV 648


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394 HVLLKTFKMKTIYFVLLISVCAV 326
           HV+L+TF      FV+ + + AV
Sbjct: 626 HVILETFHFSEADFVMDVVMLAV 648


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,691
Number of Sequences: 336
Number of extensions: 682
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)