Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30446
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)                   32   0.18 
SB_36945| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)
          Length = 224

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 279 LSRSAEFESSGKYIALTAQTLISKTK*MV---FILKVFSSTWKAKFVRYTCWSY 431
           LS + +   +  Y+ L   TL      ++   FI  V  STW++K V  T WSY
Sbjct: 50  LSNNGDSSEALGYVFLLGNTLCMSVYVLIQKRFIFNVEDSTWRSKPVTVTAWSY 103


>SB_36945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 400 AFHVLLKTFKMKTIYFVLLISVCAVSAIYLP-DDSNSADLDKYKSESFGS 254
           A  V+L    + TI  VL+I V  V  I +  DDS+S   D Y +   GS
Sbjct: 50  AMVVMLMLMMVVTIMVVLVILVVMVMVIIMVGDDSDSGGDDDYNATCVGS 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,007,215
Number of Sequences: 59808
Number of extensions: 71331
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)