Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30445
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)                    75   4e-14
SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)                     30   1.9  
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)
          Length = 43

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 92  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQ 208
           +NPKPFLNSLTGK V++KLKWG EYKG LVS DGYMNLQ
Sbjct: 5   LNPKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNLQ 43


>SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)
          Length = 1041

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 375 ILRITGKREILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNW 506
           I RI G  +  S  + I YY V S I +  + ++ + +E + NW
Sbjct: 43  ICRIPGMNKEDSNSVVIHYYQVDSLIEIKRHDDLCLADEADRNW 86


>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 110 LNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQL 211
           LNS+  KS +  + W  EYK  L+S+ GY   QL
Sbjct: 377 LNSIDTKSQVCSILWSKEYKE-LISSHGYAQNQL 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,359
Number of Sequences: 59808
Number of extensions: 237879
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)