Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30442
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.88 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    28   1.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   4.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   8.2  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 456 KKGERKQIQFR*RPKRVDQCDYLAKKKGN 370
           +K ER    FR +PK +D+   LA+ +GN
Sbjct: 161 EKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 351 QSHYGRRSLSFLPNNHIGPRALDVSEIEFVF 443
           +S+  R       N H+ PR +D+ EIE VF
Sbjct: 236 KSYKQREKTRLESNGHVSPRDMDLDEIENVF 266


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 695 HNLPTFLLTSIPTRPSKHGSHTIYTARVGAHAFRL 591
           H   +F+    P   + HGS +IY     AH+F+L
Sbjct: 291 HTTNSFIALYYPD--NSHGSFSIYKLNANAHSFKL 323


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 12  SMFLFSPYIFTGSLRDSLA 68
           SM  +  Y++T SLRDS+A
Sbjct: 927 SMSTYKDYVYTSSLRDSVA 945


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 207 NFLNKLLCFSVNNYH-CSLKFMHTFNPLSF-SPDLYKWVAKGTALARVEPVSP 55
           +FL K++ F  +N H   +  +   N +   S DLYKW    T L+ ++ + P
Sbjct: 344 DFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,912
Number of Sequences: 5004
Number of extensions: 58866
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)