Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30442
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)            34   0.13 
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)           33   0.23 
SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)                30   2.2  
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)                  29   3.8  

>SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
          Length = 386

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 552 ILHNTPASSTHFFLQSLLYYTKRRHVFINII*KKGERKQIQFR*RPKRVDQC 397
           I HN     +HF +Q +    K+ H ++N    KGE KQI     P  +++C
Sbjct: 244 IFHNLRGYDSHFIMQEIGAIVKK-HTYVN---SKGEEKQININAIPNNMEKC 291


>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
          Length = 479

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 213 TQNFLNKLLCFSVNNYHCSLKFMHTFNPLSFSPDLYKWVA 94
           +++FL+ L+CF +NN      F   F  L+ SP LYK +A
Sbjct: 227 SEDFLSSLICFPINNIQYFTDFCKAF--LAQSPQLYKQMA 264


>SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)
          Length = 565

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 192 LLCFSVNNYH---CSLKFMHTFNPLSFSPDLYKWVAKGTALARVEPVSPLGYQ 43
           LLC     +H   CS K  H F  +S S D++KW+    +    EP+ P GYQ
Sbjct: 478 LLCGGDKRWHVADCSEK--HHFACMS-SHDVFKWLISAVSGPYNEPICPDGYQ 527


>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 621 CVDCVRSVFTGTSRDRR*KKCG*IMC 698
           C+ C+++ FT  +R    +KCG ++C
Sbjct: 90  CMSCMKTKFTAINRRHHCRKCGAVVC 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,705
Number of Sequences: 59808
Number of extensions: 412540
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)