Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30442
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14400.3 68417.m02222 ankyrin repeat family protein contains ...    30   1.3  
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ...    30   1.3  
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ...    30   1.3  
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat...    29   4.1  
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat...    29   4.1  

>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 VPFLFCQIITLVHALWTLAKLNLFSFAFFLYYI 468
           V FLF  I  + H  W L  +++ S  FFL+ I
Sbjct: 522 VAFLFGVITAIAHVKWLLVTISIISGGFFLFAI 554


>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 VPFLFCQIITLVHALWTLAKLNLFSFAFFLYYI 468
           V FLF  I  + H  W L  +++ S  FFL+ I
Sbjct: 522 VAFLFGVITAIAHVKWLLVTISIISGGFFLFAI 554


>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 670

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 VPFLFCQIITLVHALWTLAKLNLFSFAFFLYYI 468
           V FLF  I  + H  W L  +++ S  FFL+ I
Sbjct: 588 VAFLFGVITAIAHVKWLLVTISIISGGFFLFAI 620


>At5g66720.2 68418.m08411 5-azacytidine resistance protein
          -related contains weak similarity to 5-azacytidine
          resistance protein azr1 (Swiss-Prot:Q09189)
          [Schizosaccharomyces pombe]
          Length = 411

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 87 TALARVEPVSPLGYQ*KCRGKKETYF 10
          TAL+R+ PVS  G+Q    GK +++F
Sbjct: 4  TALSRLNPVSQFGFQRIVAGKSKSFF 29


>At5g66720.1 68418.m08410 5-azacytidine resistance protein
          -related contains weak similarity to 5-azacytidine
          resistance protein azr1 (Swiss-Prot:Q09189)
          [Schizosaccharomyces pombe]
          Length = 414

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 87 TALARVEPVSPLGYQ*KCRGKKETYF 10
          TAL+R+ PVS  G+Q    GK +++F
Sbjct: 4  TALSRLNPVSQFGFQRIVAGKSKSFF 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,088,333
Number of Sequences: 28952
Number of extensions: 292161
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)