Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30440
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    70   3e-13
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    27   2.8  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   3.8  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   6.6  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 9/211 (4%)
 Frame = +1

Query: 1   QNKSQNQELIKVTTTNKESYECQLPE--LRSTESTSIDDYDGPSPLHLLKPLMNKEMCSY 174
           + K++  +L  +    K  Y C  P   L    ST+   YD           +N+    +
Sbjct: 67  KEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTTEPSYDLQELRIQGTEKINELANVF 126

Query: 175 RLES--YWSYEVCHGRYIRQYH-EEREG--KQINTQEYFLGYWSPEKQAKLEAEMKAAQE 339
            +E+  YW+Y+  +G+++RQYH E ++G  K +    Y LG  +P  Q K     K  +E
Sbjct: 127 LIENRGYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILG-TAPNTQTK-----KNLEE 180

Query: 340 SKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCYTHG-KHEVYSFRETST 516
           +  I     VEG A   ++    +GT+CD+  +PR   + Y C T+    E+  ++E S+
Sbjct: 181 NWAI---GFVEGKAY--LQTTFRNGTMCDITKRPRHVILSYECSTNSDTPEITQYQEVSS 235

Query: 517 CEYEIIILSPFLCEHPQFK-PMDVSENVINC 606
           C Y + I  P LC  P FK   D+    I C
Sbjct: 236 CAYSMTIHVPGLCSLPAFKIQEDIPSEKIVC 266


>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 496 SFRETSTCEYEIIILSPFLCEHPQFKPM--DVSENVINCLPIG 618
           SFRE    ++E  +L  F+  HP+   +   + + +IN  P+G
Sbjct: 254 SFRENKVADHEQALLGYFVRYHPEIAAIIGILPQTLINSYPVG 296


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 214 RYIRQYHEEREGKQINTQEYFLGYWSP-EKQAKLE 315
           +Y+R++   REG   NT +     W+P +K   LE
Sbjct: 43  KYLREFDMTREGNVTNTPKAIPSSWNPNDKSDSLE 77


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 232 HEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEG 375
           +EER+ K+   +  F  + +P+K  +L    +A ++ K +P +   +G
Sbjct: 336 YEERQAKRAARENAFTEHQTPQKPEQLHPSWEAKRKQK-MPSSAAFQG 382


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 49  KESYECQLPELRSTESTSIDDYDGPSPLH 135
           KES+  +L  L+ TEST++  Y    PLH
Sbjct: 368 KESFSARLQSLQDTESTNL--YISNLPLH 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,372
Number of Sequences: 5004
Number of extensions: 69143
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)