Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30440
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12) 89 3e-18
SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05) 29 3.0
SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6) 29 3.0
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09) 29 3.0
SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13) 29 4.0
SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 29 5.3
SB_39166| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13) 28 7.0
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 28 7.0
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 28 9.2
SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31) 28 9.2
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 28 9.2
>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
Length = 917
Score = 89.4 bits (212), Expect = 3e-18
Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 6/102 (5%)
Frame = +1
Query: 148 LMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMK 327
++ E +LE+YW+YE+CHG+++RQ+H+ER K + QEY LG +SP ++++ +
Sbjct: 772 ILPAEQIKQKLEAYWTYELCHGKHVRQFHDERSQKAVKMQEYILGKYSPPEKSQQSTDSS 831
Query: 328 AAQESKQI---PK---TTKVEGVALPNVEIVMDDGTICDLNG 435
+ + ++++ PK T KVEG + E+VM +GT CDL G
Sbjct: 832 SKESTEEVHTKPKLIPTRKVEGRDMRYYEVVMGNGTPCDLKG 873
>SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05)
Length = 463
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 430 NGKPRLTRVHYVCYTHGKHEVYSFRETSTCEYEIIILSPFLC---EHPQFKPMDVSENVI 600
NG ++ H C + +S+CE+E++ + + HP P DV E ++
Sbjct: 122 NGPIKILESHSECILELPKGAKTLASSSSCEHEVVRFADNIIGVQGHPDLSPSDVDEKIV 181
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 430 NGKPRLTRVHYVCYTHGKHEVYSFRETSTCEYEIIILSPFLC---EHPQFKPMDVSENVI 600
NG ++ H C + +S+CE+E++ + + HP P DV E ++
Sbjct: 364 NGPIKILESHSECILELPKGAKTLASSSSCEHEVVRFADNIIGVQGHPDLSPSDVDEKIV 423
>SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)
Length = 479
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 307 KLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDL 429
+L+ +K + + +P TTKV G+AL GT+C+L
Sbjct: 70 RLDNNLKYLELATSLPNTTKVMGIALTGWSRYDYFGTLCEL 110
>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
Length = 525
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 157 KEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQ 336
+EM RL+ W HGRYIR + + F+ EK+A+ E + + +
Sbjct: 405 EEMEKRRLQEVWRIPPLHGRYIRHVFPKHHRFVAPIKLLFVPSLK-EKRAREEEKARVER 463
Query: 337 ESKQI 351
E K++
Sbjct: 464 EKKRV 468
>SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)
Length = 771
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 253 QINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLN 432
Q++TQ+ + +P + L + + AQE K +P++ + PN + + +DG I D
Sbjct: 204 QLDTQDPPVNKKAPANKETLSSNL--AQEEKNLPESNALNTKGTPNDKDLQEDG-IRDST 260
Query: 433 GK 438
GK
Sbjct: 261 GK 262
>SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 132 KR*WTIVIINAGRLRTTKFRQLTFVTLFICC-CYFN*LLVLRLVL 1
KR I ++ GRL T FR F LF+ CY + LLV R+ L
Sbjct: 813 KRDQRIPVMLEGRLNTLSFRDHFFTQLFLMSNCYESALLVKRVRL 857
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 618 RCSKEAKGLIENGSEQFEISSSEHKTHG*C*PDS*GYTCSFE 743
RCS +AK + E + + S HG C PD+ Y+C E
Sbjct: 229 RCSCDAKHVGEKCNIVVNVCLSNPCAHGICIPDASSYSCMCE 270
>SB_39166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 235 EEREGKQINTQEYFLGYWSPEKQAKLEAEMK 327
+E EG+ +E F W+P+ A+L A+++
Sbjct: 274 DEEEGQDTQMRERFTSKWTPKPSAELTAQLR 304
>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
Length = 817
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 571 KPMDVSENVINCLPIGDAPRKPRDLLKMEANSLRFHHQSIRLMDNADQTVK--DILAVL 741
KP+D+ + + + I D KP D+ + + +++ +D D TVK DI VL
Sbjct: 751 KPVDIPDVTVKPVDIPDVTVKPADIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIAVVL 809
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 505 ETSTCEYEIIILSPFLCEHPQFKPMDVSENVINCLPIGDAPRK-PRDLLKMEANSLRFHH 681
+TS C + + +C HP+ + I+ LPI D+ + R+ L NSL HH
Sbjct: 314 QTSWCSHVTKVALERIC-HPE-------KATISALPISDSLHQLDREQLLKLTNSLLNHH 365
Query: 682 QSIRLMDNADQTVKDIL 732
+ ++D A ++ +L
Sbjct: 366 TNTDVVDTAQNLLEQLL 382
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 232 HEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVE 372
HE+ EGKQ+ Q G +KQ + + ++KA +I T + +
Sbjct: 646 HEQWEGKQVEEQMDKQGEKQMDKQGEEQMDVKACAYKDEIISTLRAQ 692
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 27.9 bits (59), Expect = 9.2
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 1/123 (0%)
Frame = +1
Query: 70 LPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREG 249
LP + T +I DY P LH+L + + M + + R+ EE
Sbjct: 442 LPTSQLTHDLAITDYHSPKRLHVLMFVKRERMLPPYQDVSFEEVTSEIELGRKMMEELRT 501
Query: 250 KQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEGVALP-NVEIVMDDGTICD 426
K+ E ++E E K+A++ + K + P NVE +D+ T
Sbjct: 502 KKDIELSICRKLQQKENSVRVE-EAKSAKDVLPLLSQLKGDICGEPMNVETPLDNKTSKS 560
Query: 427 LNG 435
LNG
Sbjct: 561 LNG 563
>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
Length = 203
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 747 DFQNCKYILNCLVSIIHESYALMMKSQTVRF 655
+F+N Y +N ++ E+Y LM K QTV F
Sbjct: 58 EFRN--YNINLQTDVVRETYKLMHKYQTVEF 86
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 232 HEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVE 372
HE+ EGKQ+ Q G +KQ + + ++KA +I T + +
Sbjct: 594 HEQWEGKQVEEQMDKQGEKQMDKQGEEQMDVKACAYKDEIISTLRAQ 640
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,215,417
Number of Sequences: 59808
Number of extensions: 503702
Number of successful extensions: 1413
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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