Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30440
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.33 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 619 DAPRKPRDLLKMEANSLRFHHQSIRLMDNADQTVKDILAVLKV 747
           +A ++ +D    +  SLRF++   +L+DN  + + DIL  + V
Sbjct: 540 NATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYDILPEVDV 582


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 609 PNRRCSKEAKGLIENGSEQFEISSSE 686
           PNRR   + +  IE+G     + SSE
Sbjct: 391 PNRRARGQLRTKIESGEGTIPVKSSE 416


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 469 YTHGKHEVYSFRETSTCEYEIIILSPFLCEHP 564
           Y HG+ +    R+T T     ++++ F+C  P
Sbjct: 244 YVHGETKQVQSRKTITRMLSAVVITFFICWAP 275


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDR 242


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 175 RLESYWSYEVCHGRYIRQYHEER 243
           R  S+     CH RY    HE+R
Sbjct: 220 RSRSFQRTSSCHSRYEDLRHEDR 242


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 427 NHKLYHHPLLFQR 389
           +H L+HH +L+Q+
Sbjct: 73  HHHLHHHQVLYQQ 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,183
Number of Sequences: 438
Number of extensions: 4819
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)