Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30440
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35080.1 68418.m04151 expressed protein 99 4e-21
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 34 0.12
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote... 30 1.4
At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl methyl... 30 1.4
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 29 2.5
At1g27630.1 68414.m03375 cyclin family protein similar to cyclin... 29 3.3
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 29 4.3
At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains... 28 5.7
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi... 28 5.7
At3g44060.1 68416.m04720 F-box family protein contains F-box dom... 28 7.6
At2g23080.2 68415.m02751 casein kinase II alpha chain, putative ... 28 7.6
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ... 28 7.6
At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1) 27 10.0
At5g23750.2 68418.m02787 remorin family protein contains Pfam do... 27 10.0
At5g23750.1 68418.m02786 remorin family protein contains Pfam do... 27 10.0
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai... 27 10.0
At3g02610.1 68416.m00252 acyl-[acyl-carrier-protein] desaturase,... 27 10.0
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 10.0
>At5g35080.1 68418.m04151 expressed protein
Length = 282
Score = 98.7 bits (235), Expect = 4e-21
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Frame = +1
Query: 124 SPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQ 303
+P LL+PL K C +R E +WSYE CH +Y+RQ H E E K + QE+FLG + PE
Sbjct: 110 TPDELLQPLSEK--CLFRQEGWWSYEFCHQKYVRQLHVEDENKIV--QEFFLGTFDPEAT 165
Query: 304 AKLEAEMK-AAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCYTHG 480
A + A+ ++ Q + V +GT CDL G PR V +VC
Sbjct: 166 AAFNQTVSDASTDASQRYHSH------------VYTNGTTCDLTGSPREVEVRFVC-AET 212
Query: 481 KHEVYSFRETSTCEYEIIILSPFLCEHPQFKPMDVSENVINC--LPI-GDAPRKPRD 642
+ V S E STC+Y + + P LC+HP F+ + I+C +P+ DA R +
Sbjct: 213 RAMVTSITELSTCKYALTVQCPTLCKHPLFQLEKPVSHTIHCNAIPVEEDATRNKEE 269
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 694 VLCSDDEISNCSLPFSISPLASLEHLRLGGS 602
VLC D + N S+P S L SL+ RLGG+
Sbjct: 148 VLCLQDNLLNGSIPSSFGSLVSLQQFRLGGN 178
>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
th., PATX:G2160756
Length = 992
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 679 DEISNCSLPFSISPLASLEHLRLGGS 602
D N SLP S++ L LEHL LGG+
Sbjct: 159 DNSFNGSLPLSLTTLTRLEHLDLGGN 184
>At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 353
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 214 FHGILHSSNSFPIYMNTFLCSSKALEGEEVMDH 116
F I+HS N FP+ T S KAL G + H
Sbjct: 281 FEDIIHSKNEFPLDPKTLAISFKALYGAFISAH 313
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 529 IIILSPFLCEHPQFKPMDVSENVINCLPIGDAPRKPRDLLKMEANSLRFHHQSIRLMDNA 708
II +S F H + P + V N P D + PR++ + + + + L A
Sbjct: 602 IIFISTFPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRA 661
Query: 709 DQTV 720
DQ +
Sbjct: 662 DQKI 665
>At1g27630.1 68414.m03375 cyclin family protein similar to cyclin T1
[Homo sapiens] GI:2981196; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 317
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 202 VCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQE 339
+CH Y+RQ H + + + I T FL + ++ +L + + A+ E
Sbjct: 88 MCHRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYE 133
>At4g04970.1 68417.m00722 callose synthase, putative /
1,3-beta-glucan synthase, putative similar to callose
synthase 1 catalytic subunit GI:13649388 from
[Arabidopsis thaliana]
Length = 1768
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 VYSFRETSTCE-YEIIILSPFLCEHPQFKPMDVSENVINCLPIGDAPRKP 636
V + R+ + E Y II + FL EHP + +V +GD P+ P
Sbjct: 8 VATARDAPSLEVYNIIPIHDFLTEHPSLRYPEVRAAAAALRIVGDLPKPP 57
>At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains
Pfam profile PF05909: IWS1 C-terminus
Length = 406
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 364 KVEGVALPNVEIVMDDGTICDLNGKPRLTRV 456
+VE V + N+EI ++D IC+ GKP + ++
Sbjct: 146 QVEQV-MANLEIAVEDDVICNREGKPAINKL 175
>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
sapiens, PID:d1034112
Length = 434
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 559 HPQFKPMDVSENVINCLPIGDAPRKPRDLLKMEANSLR 672
+P P +S+ ++CLPI A R+P + ++ NS++
Sbjct: 31 NPYRLPFTLSDENLSCLPISQA-REPPPIFNLDPNSVK 67
>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
Pfam:PF00646
Length = 427
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -1
Query: 331 PLSFQPPA*PAFQGSNIPKSILGC*FVCPLFLHDTAGYTFHGILHSSNSF--PIYMNTFL 158
P F P+ F S + K LG CP F DT+ +L S F N FL
Sbjct: 116 PWLFSIPS-KVFNSSTLVKLSLGSRLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFL 174
Query: 157 CSSKALEGEEVMDHRNHQC 101
+ ALE + + H H C
Sbjct: 175 AACPALE-DLTIHHTYHPC 192
>At2g23080.2 68415.m02751 casein kinase II alpha chain, putative
identical to probable casein kinase II, alpha chain
[Arabidopsis thaliana] SWISS-PROT:O64817; similar to
casein kinase II, alpha chain 1 [Arabidopsis thaliana]
SWISS-PROT:Q08467
Length = 307
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 196 YEVCHGRYIRQYHEEREGKQINTQE-YFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKV 369
YEV +Y E EGK +NT E + P K+ K++ E+K Q P K+
Sbjct: 34 YEVVRKVGRGKYSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKL 92
>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
identical to probable casein kinase II, alpha chain
[Arabidopsis thaliana] SWISS-PROT:O64817; similar to
casein kinase II, alpha chain 1 [Arabidopsis thaliana]
SWISS-PROT:Q08467
Length = 333
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 196 YEVCHGRYIRQYHEEREGKQINTQE-YFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKV 369
YEV +Y E EGK +NT E + P K+ K++ E+K Q P K+
Sbjct: 34 YEVVRKVGRGKYSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKL 92
>At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)
Length = 280
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 304 PAFQGSNIPKSILGC*FVCPLFLHDTAGYTFHGILHSSNSFP 179
P+++ +N+P + VC LF H + T + HS+ P
Sbjct: 119 PSWKMNNVPHTTFFLTHVCFLFYHVASNITLRRLRHSTADLP 160
>At5g23750.2 68418.m02787 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 201
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 277 LGYWSPEKQAKLEAEMKAAQESKQIPKTTKVE 372
+G W K+A +EAE+K +E + K VE
Sbjct: 118 IGSWENNKKAAVEAELKKMEEQLEKKKAEYVE 149
>At5g23750.1 68418.m02786 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 202
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 277 LGYWSPEKQAKLEAEMKAAQESKQIPKTTKVE 372
+G W K+A +EAE+K +E + K VE
Sbjct: 119 IGSWENNKKAAVEAELKKMEEQLEKKKAEYVE 150
>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 540
Score = 27.5 bits (58), Expect = 10.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 533 LFCRRFYVNIHSSNLWML 586
L C F+ ++H+ NLW+L
Sbjct: 354 LACESFHADVHAGNLWLL 371
>At3g02610.1 68416.m00252 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Spinacia
oleracea SP|P28645, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 411
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 568 FKPMD--VSENVINCLPIGDAPRKPRDLLKMEANSLRFHHQSIRLMDNADQTVKDILAVL 741
FK M+ EN+++ L +A +P+D L + RF+ Q L D + D VL
Sbjct: 82 FKSMENWAQENLLSYLKPVEASWQPQDFLPETNDEDRFYEQVKELRDRTKEIPDDYFVVL 141
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 267 LGVDLFALSFFMILPDIPSMAYFIAPIAFQS 175
+G+ + FF +LPD+P + ++ PI+F S
Sbjct: 530 IGIIMMTSGFFRLLPDLPKV-FWRYPISFMS 559
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,627
Number of Sequences: 28952
Number of extensions: 354369
Number of successful extensions: 1088
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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