Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.15 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.20 
UniRef50_Q8GAG0 Cluster: Putative amino acid transporter; n=1; A...    34   2.4  
UniRef50_Q5QZX2 Cluster: Predicted transcription negative regula...    33   4.2  
UniRef50_Q0FY98 Cluster: Malic enzyme; n=1; Fulvimarina pelagi H...    32   7.3  
UniRef50_Q5CUA0 Cluster: Centrin like EF hand protein; n=2; Cryp...    32   7.3  
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    32   9.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.9 bits (84), Expect = 0.15
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -1

Query: 333 AGWWYLPVRTHKTSYHQ 283
           A WWYLP RTHK SYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.20
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -2

Query: 518 LLHRLVDELTAHLALSSYWNPQ 453
           LL R VDELTAHL LS YW+P+
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPR 176


>UniRef50_Q8GAG0 Cluster: Putative amino acid transporter; n=1;
           Arthrobacter nicotinovorans|Rep: Putative amino acid
           transporter - Arthrobacter nicotinovorans
          Length = 465

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 313 G*VPPPCLFLPWSSNAFRFEGWGSCCNYTETLELISQGGWRIYVVDIC 456
           G + PP +F  WS+ +F F   G   +    L  +  G W IY  ++C
Sbjct: 182 GLLVPPVIFTEWSTASFSFNLLGEGSSVVSVLVWMYVGAWSIYGSELC 229


>UniRef50_Q5QZX2 Cluster: Predicted transcription negative
           regulator; n=21; Bacteria|Rep: Predicted transcription
           negative regulator - Idiomarina loihiensis
          Length = 215

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 377 HPSNRNALLLHGRNKQGGGTYPCG-LTRRPTTSNYANYSFAGFILLVKFEVNRKQITK*V 201
           HP     L+L G      G YP G   R P  S++A +S  G  LLVK    +   T+ V
Sbjct: 59  HPLGEEILVLEGVFSDENGDYPAGTYIRNPPGSSHAPFSKDGCKLLVKLHQFQPTDTQVV 118

Query: 200 -INIREVFYL 174
            IN  E  +L
Sbjct: 119 RINTHEAEWL 128


>UniRef50_Q0FY98 Cluster: Malic enzyme; n=1; Fulvimarina pelagi
           HTCC2506|Rep: Malic enzyme - Fulvimarina pelagi HTCC2506
          Length = 144

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 RFEGWGSCCNYTETLELISQGGWRIYVVDICG 459
           RF+  G CC+  +T  L+ +GG ++ VVD  G
Sbjct: 58  RFDLAGLCCSLIDTFRLVRKGGCKVSVVDAGG 89


>UniRef50_Q5CUA0 Cluster: Centrin like EF hand protein; n=2;
           Cryptosporidium|Rep: Centrin like EF hand protein -
           Cryptosporidium parvum Iowa II
          Length = 471

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 57  NSVIFNTSNEVY--DILYSIFIIVISDATRGRVTSPRYRDTKIKHFPDIYYLLSNLFSIN 230
           +S +F   NE+   D+L+++++ +I +A    V S +Y    + +FP +  L+ NL  I 
Sbjct: 208 SSELFEEINELLKDDVLFNLYLELIKEANVDLVDSDKYIMEHLINFPTLKMLIGNLEKIG 267

Query: 231 FE 236
            E
Sbjct: 268 SE 269


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 371 SNRNALLLHGRNKQGGGTYPCGLTRRPTTSNYANYSF 261
           + RNALL+HG N  G  TY  GL    +   Y  + F
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGLAGHLSREGYRVFCF 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,496,263
Number of Sequences: 1657284
Number of extensions: 10730729
Number of successful extensions: 23937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23931
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)