Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   2.3  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.3  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   3.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   4.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.1  
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo...    26   4.1  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.2  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 380 PHPSNRNALLLHGRNKQGGGTYPCGLTRRPTTSNYANYS 264
           PHP N   +LL G N Q   + P     R    N  +Y+
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDYA 135


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 162 YRDTKIKHFPDIYYLLSNLF 221
           Y+D++I H  D  Y++SNLF
Sbjct: 207 YKDSEIGHMHDENYMVSNLF 226


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
 Frame = -3

Query: 166 RYLGLV--TRPRVASL---ITIMNIEY-KISYTSFEVLKITEFGN 50
           +Y+GLV  TR R+A++   I +  ++Y K+SY  F  + +TEFGN
Sbjct: 474 KYVGLVCPTR-RIAAVQHNIGLYVVDYGKLSYHLFYQICLTEFGN 517


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 39  VFDVFPNSVIFNTSNEVYDILYSIFIIVISDATRGR 146
           VFDV P + + N  ++V + L+  +  ++++  +GR
Sbjct: 218 VFDVVPVTQVKNAPDDVLEDLFKNYDFIVTEYGKGR 253


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 338 NKQGGGTYPCGLTRRPTTSNYANYSFAG 255
           N      YP    R+P+   Y+NYS  G
Sbjct: 307 NHPHSSNYPSSSRRKPSPDRYSNYSSRG 334


>SPBC1683.10c |pcl1||ferrous iron transporter
           Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -2

Query: 362 NALLLHGRNKQGGGTYPCGLTRRPTTSNYANYSFAGFILLVKFEVNRKQITK*VINIREV 183
           NAL  H R++ G   +          S+ A++S  G   L+   +   +    V+ I  +
Sbjct: 129 NALEAHARDELGINIHTTAKPTLAALSSAASFSVGGIFPLLTSLITPLEYLSLVLPIATM 188

Query: 182 FYLGI 168
           F+LG+
Sbjct: 189 FFLGM 193


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 368 NRNALLLHGRNKQGGGTYPCGLTR-RPTTSNYANYSFAGFIL 246
           N   ++LHG N Q      CGL     + +N    +FA F+L
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFMVTSSNTNKWKIAFASFLL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,404
Number of Sequences: 5004
Number of extensions: 45843
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)