Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           30   1.0  
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851...    29   1.8  
11_08_0100 + 28348518-28348640,28349294-28349371,28349837-283499...    27   9.6  
06_01_0429 - 3056302-3056570,3056681-3056951,3057055-3057206,305...    27   9.6  
01_06_1749 - 39636951-39638102                                         27   9.6  
01_01_0635 - 4795434-4795461,4795897-4797365                           27   9.6  
01_01_0372 - 2900602-2900742,2900817-2901086,2901108-2901197,290...    27   9.6  

>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 413 SSKVSV*LQQLPHPSNRNALLLHGRNKQGGGTYPCGLTRRPTTSNYANYSFAG 255
           S ++ + LQ LP P   +    HG    GGG    G T++   S  ANYSF G
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


>07_01_1005 +
           8509777-8509968,8510059-8510205,8510326-8510544,
           8510652-8510761,8511337-8511391,8511447-8511631,
           8512537-8512599,8513713-8513782,8514159-8514242,
           8515925-8516159,8516213-8516517
          Length = 554

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 284 SNYANYSFAGFILLVKFEVNRKQITK*VINIREVFY 177
           ++Y  + F GF+ +VKF +  KQ+T+ V N+ ++ +
Sbjct: 242 ASYGMWGFPGFLSIVKF-LRSKQVTRKVTNVIQLLF 276


>11_08_0100 +
           28348518-28348640,28349294-28349371,28349837-28349977,
           28350040-28350116,28350221-28350370,28350467-28350680
          Length = 260

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 442 RKCAIHLEI*ALRSQYSYNSCPTLQTETHYCSTAEISRVVVPT 314
           RK A HL+  + +++  + SCP L  ET   ST+ +   +V T
Sbjct: 107 RKIADHLKSLSEKTRVIFLSCPPLNEETLRKSTSTVLSEIVRT 149


>06_01_0429 -
           3056302-3056570,3056681-3056951,3057055-3057206,
           3057419-3057631,3057791-3057959
          Length = 357

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 416 ISSKVSV*LQQLPHPSNRNALLLHGRNKQGGGTYPCGLTRRPTTSN 279
           + SK+S  +Q+L +   RN ++    N    G YP  LT+ P TSN
Sbjct: 169 VVSKISSTVQELYNIGARNIMVF---NMAPIGCYPAFLTKLPHTSN 211


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 399 SIVTTAAPPFKPKRITA 349
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_01_0635 - 4795434-4795461,4795897-4797365
          Length = 498

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 474 K*LLESTDIYNVNAPSTLRYKL*GLSIVTTAAPPFKPKRITAPRQK 337
           K LL+ T   N  +PST R    GLS +++  P +  ++ T  RQ+
Sbjct: 448 KVLLDCTGYSNKGSPSTARRMSEGLSFISSEMPSYLSRK-TIKRQE 492


>01_01_0372 -
           2900602-2900742,2900817-2901086,2901108-2901197,
           2902557-2902619
          Length = 187

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 322 PPPCLFLPWSSNAFRFEGWGSCCNYTETL 408
           PPP     +  +A RF   G CCNY  TL
Sbjct: 27  PPPASTELYRGSASRF---GDCCNYVSTL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,870
Number of Sequences: 37544
Number of extensions: 296035
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)