Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)                   28   4.2  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   9.8  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
          Length = 420

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +1

Query: 325 PPCLFLPWSSNAFRFEGWGSCCNYTETLELISQGGWRIYVV 447
           P CL   WS    RF      C    T     + GW++ +V
Sbjct: 147 PTCLATDWSKTGIRFWLLQKHCKCPSTAPFCCRSGWKVTLV 187


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 376 WGSCCNYTETLELISQGGWRIYVVD 450
           WGS C +++ + + + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 100  KISYTSFEVLKITEFGNT--SNTIGYYVPNPCIS 5
            ++SY  +E      +GN   S  + Y  PNPCI+
Sbjct: 1951 RLSYNKYECNCTEGYGNMNCSGLLSYCTPNPCIN 1984


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,122
Number of Sequences: 59808
Number of extensions: 332504
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)