Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   4.9  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   4.9  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    27   6.5  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    27   6.5  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    27   6.5  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 362 NALLLHGRNKQGGGTYPCG 306
           +A L+ GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 362 NALLLHGRNKQGGGTYPCG 306
           +A L+ GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 GSCCNYTETLELISQGGWRIYVVDIC 456
           GSCCN    LE + + G ++  V +C
Sbjct: 572 GSCCNEKAFLEYLQEEGKKLQAVRVC 597


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform a protein.
          Length = 1280

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 GSCCNYTETLELISQGGWRIYVVDIC 456
           GSCCN    LE + + G ++  V +C
Sbjct: 568 GSCCNEKAFLEYLQEEGKKLQAVRVC 593


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein.
          Length = 1280

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 GSCCNYTETLELISQGGWRIYVVDIC 456
           GSCCN    LE + + G ++  V +C
Sbjct: 568 GSCCNEKAFLEYLQEEGKKLQAVRVC 593


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 30  YPIVFDVFPNSVIFNTSNEVYDILYSIFIIVISDATRGRVTSPRYRDTKIKHF 188
           Y + F   P+  I +T  ++Y++        ISD    R  SP +  +++KH+
Sbjct: 232 YKLAFQGVPDQTIISTVPKLYELHLKWTTPFISDQYLFRGCSPGFAWSQLKHY 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,313
Number of Sequences: 27780
Number of extensions: 257028
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)