Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30438
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 36  IVFDVFPNSVIFNTSNEVYDILYSIFIIV 122
           ++F++FP  ++F +   V  I  S+ +I+
Sbjct: 207 VLFEIFPFCIVFGSDMIVRSIGNSLMVIL 235


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 162 YR-DTKIKHFPDIYYLLSNLF 221
           YR DTK   FP IY +  N F
Sbjct: 150 YRPDTKYMKFPAIYEIYPNYF 170


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 162 YR-DTKIKHFPDIYYLLSNLF 221
           YR DTK   FP IY +  N F
Sbjct: 150 YRPDTKYMKFPAIYEIYPNYF 170


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 376 WGSCCNYTETLELIS 420
           WGSC NY  T   ++
Sbjct: 98  WGSCNNYWNTKNCVN 112


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = +1

Query: 325 PPCLFLPWSSNAFRFEGWGS 384
           P C+ +PW  N      W +
Sbjct: 330 PICVQIPWDKNVEALAKWAN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,506
Number of Sequences: 438
Number of extensions: 3475
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)