Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30437
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0404 - 23153454-23154305,23154335-23155627                       29   5.2  
09_04_0756 + 19957247-19957315,19957426-19957584                       29   5.2  

>11_06_0404 - 23153454-23154305,23154335-23155627
          Length = 714

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -2

Query: 330 KLFKIIYLNILYDLETFFYCLVKIVYTQRSFVSIVSILQALSQL 199
           ++F+I+ L I + L+ +FY L  IV+ Q      +S+LQ+L+ L
Sbjct: 107 RVFRIMELEISF-LKDYFYTLYPIVFWQGLASLSLSVLQSLAAL 149


>09_04_0756 + 19957247-19957315,19957426-19957584
          Length = 75

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 186 RECL--KVGLVPEECLQLRQSFFECKR 260
           +EC   KV  +  EC+ LR+++F CKR
Sbjct: 30  KECAGEKVPNITSECVGLRETYFNCKR 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,286,582
Number of Sequences: 37544
Number of extensions: 266684
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)