Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30437
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-12|CAA22316.1|   96|Caenorhabditis elegans Hypothetical...    48   9e-06
Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL034393-12|CAA22316.1|   96|Caenorhabditis elegans Hypothetical
           protein Y18D10A.16 protein.
          Length = 96

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
 Frame = +3

Query: 186 RECLKV---GLVPEECLQLRQSFFECKRSLLDNRRRFRGHKG 302
           +EC+     G VP++C  + Q+F +CKRSL+D R RFRG KG
Sbjct: 53  KECIDARGDGSVPDKCFAVLQNFTDCKRSLVDMRSRFRGRKG 94


>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 739 RTYYKPMSQSNKLQS*NLLVQLTSETIQ*KCMKIPWNFILP*ILITF 599
           + +Y      +KLQ   L ++  S+T++ K MK   NFI     +TF
Sbjct: 84  KVFYCNADSFSKLQLKKLKLKKNSDTVKRKLMKFAMNFISSQTCVTF 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,695
Number of Sequences: 27780
Number of extensions: 286869
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)