Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30437
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 171  PFCNNHFLINMTLNLHVYRHMATDL 97
            PF + HF+  +  NLHVY  +   L
Sbjct: 985  PFEHRHFISGIDSNLHVYAPLKISL 1009


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 387 HYFVFKSSIGNES*TKHLIK 328
           HY   KSS+ N S  KH +K
Sbjct: 576 HYLDAKSSVQNYSLAKHQLK 595


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 195 LKVGLVPEECLQLRQSFFECKRS 263
           L VG+V   C  + Q+F+E  R+
Sbjct: 410 LAVGIVGGACSDVEQNFYEVARN 432


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 256 LHSKKLCLNCKHSSGTKPTFKHSLGVFLSF 167
           LH + +C  CK  + T   ++  L +F  +
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLFCDY 48


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 228 QLRQSFFECKRSLLDNRRR 284
           ++++ + E  R+ +DNRRR
Sbjct: 499 KIQEIYLEALRAYVDNRRR 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,718
Number of Sequences: 438
Number of extensions: 3668
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)