Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30437
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    30   1.9  
At5g62990.1 68418.m07903 hypothetical protein                          27   9.9  
At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related ...    27   9.9  
At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related ...    27   9.9  

>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 253 HSKKLCLNCKHSSGTKPTFKHSLGVFLSFLQQSLFNKHDFKSA 125
           +++ LCL   ++ G KP + + +G  L F   S    H F S+
Sbjct: 320 NNETLCLEASNNPGLKPNYIYYIGYGLGFYDMSSQKVHHFTSS 362


>At5g62990.1 68418.m07903 hypothetical protein
          Length = 494

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
 Frame = -2

Query: 342 KHLIKLFKIIY---LNILYDLETFFYCLVKIVYTQRSFVSIVSILQALSQLLNIPLV-SF 175
           +H++K  ++ +   LN L   +   Y  ++I+Y  RS++ I + L  LS +   P +   
Sbjct: 67  RHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIFEL 126

Query: 174 CPFCNNHFLINMTLNL-HVYRHMATDLLSLSRQEQN*PLFSNDKQTRKLK 28
                 H  +N T  L  +   + +   SL+ QE N     +DK   KL+
Sbjct: 127 FTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQ 176


>At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related
           contains weak similarity to NADH-ubiquinone
           oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
           sapiens]
          Length = 83

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 189 ECLKVGLVPEECLQLRQSFFECKRSLLDNRRRFRGHK 299
           EC+     P++C  LR+ + EC     + +RR R +K
Sbjct: 23  ECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYK 59


>At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related
           contains weak similarity to NADH-ubiquinone
           oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
           sapiens
          Length = 118

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 189 ECLKVGLVPEECLQLRQSFFECKRSLLDNRRRFRGHK 299
           EC+     P++C  LR+ + EC     + +RR R +K
Sbjct: 58  ECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYK 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,149
Number of Sequences: 28952
Number of extensions: 250963
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)