Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30436
(736 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase ... 30 0.022
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 30 0.022
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 30 0.022
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 30 0.022
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 26 0.27
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 26 0.27
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 26 0.27
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 26 0.27
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 23 2.6
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 22 5.9
>AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase
protein.
Length = 268
Score = 29.9 bits (64), Expect = 0.022
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 379 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
Y+ + LG HP+ +GG VW+ V HW
Sbjct: 177 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 212
Score = 29.5 bits (63), Expect = 0.029
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
+ LG HP+ +GG VW+ V HW
Sbjct: 182 KTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 212
Score = 26.2 bits (55), Expect = 0.27
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 205 VETDPGPKNPHSKLYAVGSATTPSERRLSVPATTIQSRPP 324
+ T +PH Y A+ E V TT++ RPP
Sbjct: 47 IRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPP 86
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 29.9 bits (64), Expect = 0.022
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 379 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
Y+ + LG HP+ +GG VW+ V HW
Sbjct: 491 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 526
Score = 29.5 bits (63), Expect = 0.029
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
+ LG HP+ +GG VW+ V HW
Sbjct: 496 KTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 526
Score = 26.2 bits (55), Expect = 0.27
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 205 VETDPGPKNPHSKLYAVGSATTPSERRLSVPATTIQSRPP 324
+ T +PH Y A+ E V TT++ RPP
Sbjct: 361 IRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPP 400
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 29.9 bits (64), Expect = 0.022
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 379 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
Y+ + LG HP+ +GG VW+ V HW
Sbjct: 724 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 759
Score = 29.5 bits (63), Expect = 0.029
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
+ LG HP+ +GG VW+ V HW
Sbjct: 729 KTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 759
Score = 26.2 bits (55), Expect = 0.27
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 205 VETDPGPKNPHSKLYAVGSATTPSERRLSVPATTIQSRPP 324
+ T +PH Y A+ E V TT++ RPP
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPP 633
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 29.9 bits (64), Expect = 0.022
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 379 YITIVRILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
Y+ + LG HP+ +GG VW+ V HW
Sbjct: 724 YMKKNKTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 759
Score = 29.5 bits (63), Expect = 0.029
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
+ LG HP+ +GG VW+ V HW
Sbjct: 729 KTLGAACGRIHPIGSGGMVWYQMFEYAVGHW 759
Score = 26.2 bits (55), Expect = 0.27
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 205 VETDPGPKNPHSKLYAVGSATTPSERRLSVPATTIQSRPP 324
+ T +PH Y A+ E V TT++ RPP
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPP 633
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 364 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 364 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 364 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 364 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 272
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
Score = 26.2 bits (55), Expect = 0.27
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 234 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 142
R LG HP+ +G VW+ + HW
Sbjct: 756 RNLGAACGRIHPVGSGPMVWYQMFEYAIGHW 786
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 23.0 bits (47), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 504 RSKSAFSELEPFSGSDFDFLTEGTTPSS 421
RS SAFS ++P S D+ + + +P+S
Sbjct: 149 RSSSAFSYIKPSSERDYFSVKKLPSPAS 176
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 622 TVRLRPHHSD*RMAKQYNLH 681
T +L+PH SD Y +H
Sbjct: 1413 TFKLKPHESDVEPIHGYTIH 1432
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,598
Number of Sequences: 336
Number of extensions: 4374
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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