Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30436
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.30 
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    28   1.6  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.1  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   4.8  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +2

Query: 506 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG---WLNSII 676
           A+   G+GR+ + L  V G    S+ +  +  S IL             +G   +L    
Sbjct: 68  AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127

Query: 677 FIGMMVGAYAWGSVADSLGR 736
            +G++VGA  W   AD++GR
Sbjct: 128 NLGLLVGAMVWSLSADTIGR 147


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 57  SGGTLTNNKEEAHQIVTGKLYAVGSATTPSERRLSVPA-TTIQS 185
           +GGT+TN   E  Q +T  L A  S T P    + +P  +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 498 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 367
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +2

Query: 389  LQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLV 568
            L +N         G +P++  S S     +++      R + +T + R  Y+ + +  ++
Sbjct: 1302 LDVNNQRHTLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVL 1361

Query: 569  STSE-EMDVISMSFILPSAQCDLDLTTQTKGWL 664
            S+ +  +   S + ++ S  C+  L   TKGWL
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 371 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 520
           CD    L+    GSK+          K++  P K  +N+E  D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,104
Number of Sequences: 5004
Number of extensions: 69607
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)