Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30436
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)                  40   0.002
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    33   0.24 
SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13)                 31   0.97 
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           29   3.9  
SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05)              29   5.2  
SB_58172| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              29   5.2  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   6.8  
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)            28   6.8  
SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)                     28   6.8  
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               28   9.0  
SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)                 28   9.0  
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)                28   9.0  

>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
          Length = 563

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +2

Query: 461 DPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDL 640
           D EK         E AI+  GYG F   LL + G    ++ M++  ++ + P+ +C+ +L
Sbjct: 40  DQEKEDKELTYTVEDAIDRLGYGLFQIKLLLMIGFAWMADSMEITILAIMCPAIRCEWNL 99

Query: 641 TTQTKGWLNSIIFI 682
           +T  +  + ++  +
Sbjct: 100 STWAEALITTVTLL 113


>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 473 GSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLT 643
           G  S       A+E  GYG +   L  +      ++ M++  +S ++P  +C+ DL+
Sbjct: 79  GKTSPTFTVSDAVESAGYGWYQLRLGIISSFQRVADAMEITMLSILVPYVKCEWDLS 135


>SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13)
          Length = 371

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 623 QCDLDLTTQTKGWL-NSIIFIGMMVGAYAWGSVADSLGR 736
           Q DL        WL NS++F G  +GA   G +AD  GR
Sbjct: 108 QFDLVCDNSFHAWLANSMLFFGWALGAIILGMIADKYGR 146


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 371 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKAD 496
           CD K  L  NGP     E G      +  S PE+  N +KAD
Sbjct: 300 CDKKALLLRNGPVMTREEGGKSVESHRKGSSPERVENEDKAD 341


>SB_30134| Best HMM Match : Lectin_C (HMM E-Value=5.4e-05)
          Length = 131

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 519 PDMAASTTCCWQYAVSSALPRRWTSSRCRSSY 614
           PD +     C  + +S  L RRW    C +SY
Sbjct: 89  PDNSGGHENCGHFLLSGKLARRWNDISCNNSY 120


>SB_58172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 84  EEAHQIVTGKLYAVGSATTPSERRLSVP 167
           EE+H I+  +L    SATT  ER+ S+P
Sbjct: 19  EESHTIIPLRLIKHNSATTKKERKCSLP 46


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 341 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVK 448
           TDP     HNC +    Q  G    T E G V  VK
Sbjct: 546 TDPDKTQTHNCSLVNSAQSTGSSYFTVENGTVLEVK 581


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 274 WG*WRYQQRIACCEDSWAPGQFLPSYAGGRLC 179
           W  WR +  ++ C D  APGQ+ P     R C
Sbjct: 510 WNGWRNETPVSRCNDICAPGQY-PVNGSTRCC 540


>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
          Length = 582

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 659 WL-NSIIFIGMMVGAYAWGSVADSLGR 736
           W+ NS++F G  +GA   G +AD  GR
Sbjct: 409 WMANSMLFFGWAIGAIFLGIIADKYGR 435


>SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/47 (19%), Positives = 26/47 (55%)
 Frame = +2

Query: 566 VSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIGMMVGAYA 706
           +  ++ M++  +S ++P  +C+ DL+      + +++ +  +  AYA
Sbjct: 21  MQVADAMEITMLSILVPYVKCEWDLSIVQVAMITTMLIVSSVAVAYA 67


>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 63  GTLTNNKEEAHQIVTGKLYAVGSATTPSERRLSVPATTIQSRPPA 197
           GT  ++K  A  I T  L+AV    TP +      ATT +SR P+
Sbjct: 214 GTTASDKSTA--ISTHPLFAVNEVKTPGQTTGPAQATTEESRSPS 256


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 19  FTSPHPHRS*PPEVAERSQTTRKKHIRSS 105
           +T P P    PP V  RSQ  R K + S+
Sbjct: 408 YTKPEPKGRRPPRVGRRSQRHRSKSLNST 436


>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
          Length = 421

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 526 WPLPLHAVGSMRSRQHFRGDGRHLDV 603
           W L +  +   + R HF G G H+DV
Sbjct: 185 WNLSIEKLRDFKKRAHFLGRGNHVDV 210


>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
          Length = 433

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 308 YKAARPHRMVETDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPE 469
           +K    ++  + +  P +P   D K  L L   GS +  LGVVP V   +  PE
Sbjct: 335 FKRGTSYQKTKKENQP-SPMTRDFKEHLTLTNTGSGSISLGVVPEVLIPEVSPE 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,580,000
Number of Sequences: 59808
Number of extensions: 571694
Number of successful extensions: 1485
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)