Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30436
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13050.1 68416.m01626 transporter-related low similarity to a... 66 2e-11
At1g75220.1 68414.m08738 integral membrane protein, putative str... 31 1.0
At1g54730.2 68414.m06240 sugar transporter, putative similar to ... 30 1.4
At1g19450.1 68414.m02423 integral membrane protein, putative / s... 30 1.4
At1g08930.1 68414.m00994 early-responsive to dehydration stress ... 30 1.4
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 30 1.8
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 30 1.8
At1g08920.2 68414.m00993 sugar transporter, putative similar to ... 29 3.2
At1g08920.1 68414.m00992 sugar transporter, putative similar to ... 29 3.2
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 4.2
At4g09670.1 68417.m01588 oxidoreductase family protein similar t... 28 5.6
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 28 5.6
At1g69690.1 68414.m08020 TCP family transcription factor, putati... 28 5.6
At5g25000.1 68418.m02963 hypothetical protein 27 9.8
At5g08340.2 68418.m00983 riboflavin biosynthesis protein-related... 27 9.8
At5g08340.1 68418.m00982 riboflavin biosynthesis protein-related... 27 9.8
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain... 27 9.8
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/79 (34%), Positives = 51/79 (64%)
Frame = +2
Query: 500 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 679
+ A+ G+G+F +LA G+ +E M+++ +SF+ P+ Q +L+ + + + S++F
Sbjct: 11 DEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVF 70
Query: 680 IGMMVGAYAWGSVADSLGR 736
GM++GAY+WG V+D GR
Sbjct: 71 AGMLIGAYSWGIVSDKHGR 89
>At1g75220.1 68414.m08738 integral membrane protein, putative strong
similarity to integral membrane protein GI:1209756 from
[Beta vulgaris]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 487
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL LT S+ +G MVGA A G +A+ +GR
Sbjct: 79 DLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGR 114
>At1g54730.2 68414.m06240 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
+L+L+ SI+ IG M+GA G +AD +GR
Sbjct: 63 ELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGR 98
>At1g19450.1 68414.m02423 integral membrane protein, putative /
sugar transporter family protein similar to GB:U43629
GI:1209756 integral membrane protein from [Beta
vulgaris]; contains Pfam profile PF00083: major
facilitator superfamily protein; contains TIGRfam
TIGR00879: Sugar transporter
Length = 488
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL LT S+ +G MVGA A G +A+ +GR
Sbjct: 80 DLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGR 115
>At1g08930.1 68414.m00994 early-responsive to dehydration stress
protein (ERD6) / sugar transporter family protein
identical to ERD6 protein {Arabidopsis thaliana}
GI:3123712; contains Pfam profile PF00083: major
facilitator superfamily protein; contains TIGRfam
TIGR00879: Sugar transporter
Length = 496
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL L+ SI+ +G ++GA G VAD LGR
Sbjct: 89 DLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGR 124
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL LT S++ G M+GA G +AD +GR
Sbjct: 59 DLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGR 94
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL LT S++ G M+GA G +AD +GR
Sbjct: 59 DLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGR 94
>At1g08920.2 68414.m00993 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 477
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL L+ SI+ G M+GA G VAD +GR
Sbjct: 63 DLGLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGR 98
>At1g08920.1 68414.m00992 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 629 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGR 736
DL L+ SI+ G M+GA G VAD +GR
Sbjct: 63 DLGLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGR 98
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 17 SSPHLTRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW*RHYPQ*ETFECPRDHHTKPP 190
S+PH + K + HK++ TS R R+ W P+ E+F+ + K P
Sbjct: 403 STPHESNGKTKKKKKKKTHKEEQPQTSPRKRKHRGGWITEEPEEESFQRGKMRRPKSP 460
>At4g09670.1 68417.m01588 oxidoreductase family protein similar to
AX110P [Daucus carota] GI:285739; contains Pfam profiles
PF01408: Oxidoreductase family NAD-binding Rossmann
fold, PF02894: Oxidoreductase family C-terminal
alpha/beta domain
Length = 362
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 605 FILPSAQCDLDLTTQTKGWLNSII 676
FI+P + + TT TK W N ++
Sbjct: 265 FIIPYKETEASFTTSTKAWFNDLV 288
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 347 PGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAI-ELTG 523
P PKNP D N P K++ D EK + +R I G
Sbjct: 252 PYPKNPIMADFAAQFPYNA----------TPDQKQAFLDVEKDLTERETPMDRLICGDVG 301
Query: 524 YGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDL 634
+G+ L A+ +VST ++ V++ + +L D+
Sbjct: 302 FGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDV 338
>At1g69690.1 68414.m08020 TCP family transcription factor, putative
similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
Oryza sativa]
Length = 325
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 344 DPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTG 523
DP P + H + L + S + L ++ + + S+P+K + +R ++ G
Sbjct: 2 DPDPDHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEG 61
Query: 524 YGR 532
GR
Sbjct: 62 RGR 64
>At5g25000.1 68418.m02963 hypothetical protein
Length = 121
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 615 GRMNDIEMTSISSEVLTRPHTANSM*WKRPYPVSSIARSKSAFSELEPFSGSDFD 451
G +N+ E ++ +L + + + WKR YP+ + K E+E S +D D
Sbjct: 59 GDLNEEEDDNVLMHLLKNNYVFSELDWKRGYPL--LQHQKDEEIEIEDKSNADAD 111
>At5g08340.2 68418.m00983 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 351
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 235 HSKLYAVGSATTPSERRLSVPATTIQSRPP 324
H + V + PSER +SVP ++I + PP
Sbjct: 283 HRLILRVRTQDMPSERMISVPRSSILNLPP 312
>At5g08340.1 68418.m00982 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 367
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 235 HSKLYAVGSATTPSERRLSVPATTIQSRPP 324
H + V + PSER +SVP ++I + PP
Sbjct: 283 HRLILRVRTQDMPSERMISVPRSSILNLPP 312
>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471;contains Pfam PF00917: Meprin And
TRAF-Homology (MATH) domain
Length = 1052
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -3
Query: 506 PVRSRLFPNWSPSPDRISIS*LKVRRQARRFWNLGRLVVDPLLHHNCEDSWAPGQFLPSY 327
P + + P PSP +S S R + GRL DP LH+ + ++ P + +
Sbjct: 764 PSSAPIIPAMRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHN--QQTYTPQSYKNAI 821
Query: 326 AGGRL 312
G L
Sbjct: 822 VGNSL 826
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,777,927
Number of Sequences: 28952
Number of extensions: 406593
Number of successful extensions: 1125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -