Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30433
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    35   0.013
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    28   1.5  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.6  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   6.1  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   6.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   8.1  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 24/90 (26%), Positives = 43/90 (47%)
 Frame = +2

Query: 14  NEATQSYTKLYKKENKTKSEINDTPIPFSLTNNSLPAGKSTLNSTSVGQSTLDQLSSDYP 193
           + +T S T      + T S ++ T    S T++SL +  S+LNST+   +T   LSS   
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSLSSTAA 218

Query: 194 DDLKQVNNVGSGLKNMNSEAVIQESQITTS 283
            +    +++ S   N  + A    S I+++
Sbjct: 219 SNSATSSSLASSSLNSTTSATATSSSISST 248


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +2

Query: 11  FNEATQSYTKLYKKENKTKSEIN--DTPIPFSLTNNSLPAGKSTLNSTS-VGQSTLDQLS 181
           FN +  SY    +  N     +N  DT  P  +    +       NS      ++L  L 
Sbjct: 341 FNNSIDSYISPNQSPNTDVPSLNRDDTTDPKVVNTGDIINMLDDANSIEGSNMNSLSPLL 400

Query: 182 SDYPDDLKQVNNVGSGLKNMNSEAVIQESQ 271
            DYP+ L  VNN  S   + +    +  SQ
Sbjct: 401 FDYPNSLYPVNNTSSEQHHNSYRGSVSNSQ 430


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 684 EKVRSSLLE*LTVGSEYNRTFGCESTKIFSVG-VPSFEFFRLLISAAGSFLATSKIFPLI 508
           +K+ + LL   TV +     F      I +   +PSF+ F  L+SA   +  T  I PL+
Sbjct: 320 KKILNLLLYISTVSNRSPDAFKLALQSISNANQIPSFDVFSRLMSALVKYNMTEMILPLV 379

Query: 507 SE 502
            +
Sbjct: 380 KQ 381


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 422 TIPLRSS--PTSSLKIESPGLPLVGTVR-DSEINGKILEVAKNDPAAEIS 562
           ++P  SS  PTSS  +ES    L+GTV   +E+    L  + N P +  S
Sbjct: 362 SLPASSSQMPTSSFNMESLSQSLLGTVEAPAEVGAISLTESFNSPVSNSS 411


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 98  SLTNNSLPAGKSTLNSTSVGQSTLDQLSSDYPDDLKQVNNVGSGLKNMNSEAVIQES 268
           SL+ N +   K      +     LD+L    PDD + +  VG G K M+S   I  S
Sbjct: 113 SLSQNGMTVTKLVFGGEA-SLVELDKLRKQCPDDTQVIIGVGGG-KTMDSAKYIAHS 167


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 262 LYNCFTVHVFQPTSYIIYLFKVIRVIRRQ 176
           L +CF  H   P + I  L  ++ VIRRQ
Sbjct: 190 LSSCFCHHFLNPPTRIPILSVMVEVIRRQ 218


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 503  SEINGKILEVAKNDPAAEISNR 568
            S +  K+L++A++ PAAE +NR
Sbjct: 1109 SFLGNKLLQLAESGPAAEAANR 1130


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 618 CESTKIFSVGVPSFEFFRLLISAAGSFLATSKIFPLISES-RTVP 487
           CE+ KI      SF+  R+    + S    SK+FPL S S  T P
Sbjct: 628 CEAAKI-----SSFQLSRVATPLSASVRRPSKVFPLFSTSFETTP 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,159
Number of Sequences: 5004
Number of extensions: 55122
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)