Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30433
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.10 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 62  TKSEINDTPIPFSLTNNSLPAGKSTLNSTSVGQSTLDQLSSDYPDDLKQVNNVGSGLKNM 241
           T S I   P   + T    P    TL      Q TL +++S+Y ++ + +NN    ++  
Sbjct: 445 TSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEAT 504

Query: 242 N 244
           N
Sbjct: 505 N 505


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/58 (20%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 113  SLPAGKSTLNSTSVGQSTLDQLSSDYPDD--LKQVNNVGS---GLKNMNSEAVIQESQ 271
            SLPA  +++NS +V +  ++ + +    +   K+  N+G     +   ++++++Q +Q
Sbjct: 858  SLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQSNQ 915


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 438 HHRHQV*KSSHLGYR 482
           HH HQ     HL YR
Sbjct: 353 HHHHQTQSLQHLHYR 367


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 491  TVRDSEINGKILEVAKNDPAAE 556
            T+R +E++ +  E A+N  AAE
Sbjct: 1121 TLRTAEVHNRSRETARNRMAAE 1142


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 476 LPLVGTVRDSEINGKILEVAKNDPAAEISNRKNSKDGTPTLKIF 607
           L L+G   D++ + +  ++   DP      R   KDG  T+  F
Sbjct: 22  LLLLGRTVDAQRSLEFFDLLPEDPKLYDKMRPPKKDGQATVVYF 65


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 632 LYSEPTVSYSKSEDLTFSHYTV 697
           L + PT +YS S  L+ + Y++
Sbjct: 181 LVANPTANYSASTTLSHAEYSM 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,598
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)