Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30432
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   0.84 
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    27   0.84 
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.5  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    26   2.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   5.9  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   5.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   7.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   7.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   7.8  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 212 KAPLMDRFGSYLMNHISKSMEKIL--LSYTDYPLLLRCGD 99
           K P+ + F  Y+  H    +   +  LS  DYP ++ C D
Sbjct: 285 KGPMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACAD 324


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 200 MDRFGSYLMNHISKSMEKILLSYTDYPLLLRCGDELTAHLVLSGYW 63
           +D F  Y+   +  + +  L+  TD+  L R  +  T ++ L G+W
Sbjct: 122 VDGFMMYVNEDLINAFDIRLMLVTDFDTLKRRREARTGYITLEGFW 167


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 281 WLVESFVASDGFDEDGDRCLWYLK 210
           W V S VA D  DEDG   +W LK
Sbjct: 902 WFVPS-VAGDDEDEDGSGPIWQLK 924


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 360 NVPSDRNRVRTEKIRRETQWA 298
           N+P+D      E+IR+E +WA
Sbjct: 138 NIPNDFTPEEEEQIRKENEWA 158


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 96  AHSPPGVKWLLEPIDIYNVNAPHTLR 19
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 276 EPIHPQTQPTEFLAGSSQCGRDYDPMEHSAKN 371
           EP+  +  PTE+L   +   +DY+ + H  +N
Sbjct: 593 EPVSFEIDPTEYLFKLALLRKDYEQVLHLIQN 624


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 285 HPQTQPTEFLAGSSQCGRDYDPMEHSAK 368
           HP   P+E++    Q G D + M+ +++
Sbjct: 753 HPDKTPSEYIQWRFQSGEDLEAMDKASR 780


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 182  YLMNHISKSMEKILLSYTDYPLLLRCGD 99
            Y M+ + K++EKIL SY D  ++  C D
Sbjct: 2105 YSMDDV-KAVEKILKSYPDVHVIYLCCD 2131


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 242  EDGDRCLWYLKAPLMD-RFGSYLMNHISKSMEKILLSYTDYPLL 114
            +D    +W   AP +D ++G  L+N  SKS EK   SY    LL
Sbjct: 924  KDNKLIIWLSTAPGLDAQWGRVLVND-SKSKEKYYPSYIVAKLL 966


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 102 GRAHSPPGVKWLLEPIDIYN 43
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,842
Number of Sequences: 5004
Number of extensions: 34203
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)