Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30432
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1012 - 8576196-8576489,8576809-8577045 31 0.35
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 29 1.4
11_06_0073 + 19817084-19817388,19817777-19818023 29 1.8
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 2.4
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 28 3.2
10_08_0041 - 14374684-14377339,14377371-14378233 27 7.5
07_01_0880 + 7301042-7301548 27 7.5
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 7.5
01_06_1047 + 34092702-34094249 27 7.5
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 27 7.5
09_04_0544 - 18455161-18455223,18455470-18455591,18455772-18456084 26 9.9
03_06_0618 - 35132077-35132830,35133690-35135212 26 9.9
01_06_0475 + 29610268-29610711 26 9.9
>07_01_1012 - 8576196-8576489,8576809-8577045
Length = 176
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 374 AVLRRMFHRIVIASALRRSGEKLSGLCLWVNWLVESFVAS 255
A LR FHRI A+ R+ K W W V+ + S
Sbjct: 76 ATLRHGFHRIATTKAIDRANHKARARISWAAWFVDMNLGS 115
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 225 APVTVLVEPVACDEGLDEPIHPQTQPTEFLAGSSQCGRDYDPMEHSAKNCSC 380
AP++ L P+ D+G D+ + TE L+ QC RD + S CSC
Sbjct: 808 APLSPLRVPIPSDDGHDDTKREYDKMTENLSPQQQC-RD---KQTSISKCSC 855
>11_06_0073 + 19817084-19817388,19817777-19818023
Length = 183
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 177 EI*SKPIHQRCF*VPQAPVTVLVEPVAC 260
++ S P C+ VPQA + V + PVAC
Sbjct: 110 QVASSPHFAACYKVPQADMAVQLSPVAC 137
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 216 VPQAPVTVLVEPVACDEGLDEPIHPQTQPTEFLAGSSQCGRDYDPMEHSAKNC 374
+P P + V A +G++E + TEFL G+D E + C
Sbjct: 202 IPTTPRPIPVNTTASSDGIEETVDELVHFTEFLTVPGDGGKDIPEEEAVCRIC 254
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 290 WVNWLVESFVASDGFDE-DGDRCLWYLKAPLMDRFGSYLMNHISKSMEKILLSYTDYPLL 114
WV+ V A D D LW + P + ++L H S +M+K L T YPLL
Sbjct: 485 WVSHQVTDLWAKTSPDAGDPMWALWPMGGPWL---ATHLWEHYSYTMDKQFLEKTAYPLL 541
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 289 HRHSPLSFSPDLLSADAITIRWNILRRTALASQCYQHLR 405
HRH ++ + +ADA T N+ R + CYQH+R
Sbjct: 671 HRHLYIAVDMEF-AADAAT---NVSHRPVTSISCYQHMR 705
>07_01_0880 + 7301042-7301548
Length = 168
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 219 PQAPVTVLVEPVACDEGLDEPIHPQTQPTEFLAGSSQCGRDYDPMEHSAKNC 374
P P + +V A D G P P + P + S C D P AK C
Sbjct: 39 PGTPKSTVVPASAADGGYAMP--PISPPPSYSYQWSSCNSDQPPPPSKAKKC 88
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 26.6 bits (56), Expect = 7.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 329 LRRSGEKLSGLCLWVNWLVESFVASDGFD----EDGDRCLWYLKAPLMDRFGSYLMNHIS 162
LR E L +C VN + + D FD +DG R + + +D +GS+L+++I
Sbjct: 4208 LRAVMEILDFMCSGVNQATDG--SEDIFDSVIPDDGCRLVSAVSCVYIDPYGSHLLSNID 4265
Query: 161 KSMEKILLSYTDYP 120
S +I ++ D P
Sbjct: 4266 TS--RIRFAHPDLP 4277
>01_06_1047 + 34092702-34094249
Length = 515
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 278 LVESFVASDGFDEDGDRCLWYLKAPLMDRFGSYLMNHISKSMEKILLSYTDYPLLLRCG 102
++E F+ F+ DG++ LW KA + L N + +++ ++ PLL R G
Sbjct: 112 MLEDFLGRGIFNSDGEKWLWQRKATSYEFSKRTLRNFVVDTVQFEVIERL-LPLLERAG 169
>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 PQAPVTVLVEPVA-CDEGLDEPIHPQTQPTEFLAGSSQCGRDYDP 350
P+AP T +V P+A G P P+ F+ GSS R P
Sbjct: 942 PRAPSTGVVRPIAVSSHGTAPPRGPRLPSGTFVGGSSSSQRSPIP 986
>09_04_0544 - 18455161-18455223,18455470-18455591,18455772-18456084
Length = 165
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 221 WYLKAPLMDRFGSYLMNHISKSME 150
W+ +A ++ R G+YL N I + +E
Sbjct: 126 WHTRATVLARIGNYLKNRIPEILE 149
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 164 SKSMEKILLSYTDYPLLLRCGDELTAHLVLSG 69
SK K +L + +RCG ++ AH++LSG
Sbjct: 284 SKFTFKSVLEVCNLTNAVRCGRQIHAHVILSG 315
>01_06_0475 + 29610268-29610711
Length = 147
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 271 STSQFTHRHSPLSFSPDLLSADAITIRWNILRRTALAS 384
S+++ T HSP S SPD AD + + RR AL S
Sbjct: 64 SSTRATLTHSPSSASPDTNHADHVAVSC-AYRRLALLS 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,604
Number of Sequences: 37544
Number of extensions: 229089
Number of successful extensions: 541
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -